Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0663 ATGGCCGTTCAAGCTCAGTACCCATCCAATGTTCTTCTTCTCAACAGAGGCGTGCAAGACGGGAAGATTGATTGCTCTTTACAACCGCAGCCGGGTGGGTTTCTGGACCAATCCCATATGTTGTTTAACAATGGAGTGGTGGCCAATAGCCGGAAAAGAGGAAGAGAAGTGTTTGGCAACACCAATACTGGCGGTGTAGTTGCGCCTACGGTGAATTCATTTCCGCTTCAGCCTCAGCCTTCTCAGCTGATAGACCTCTCCGTCCTCCACAATCACCAGCCAAATGTGGTGTCCACCGGCCTCCGCTTAGCCTTTGGAGAACAACACCTTCAACACCCCCAACAACAACAACAGCAGCAGCAAAATCAACAACAACAATCAGCTGTATTATCTCTATTATCAGAAGATTTCACCGCCCAAATAAAACACCAAAGGGACGAAATCGACCAGTTCCTTCGAGCCCAGGGAGAGCAGTTGAGGCGCACATTAGCGGAGAAGCGGCAGAGACACTACCGTGCCCTGCTCGGCGCGGCGGAGGAGTCTGTTGCCCGGAGGCTGCGAGAGAAGGAGGCCGAGGTGGAAAAGGCCGCCCGGTGCAACGCGGAGCTGGAGGCTCGGGCGGCCCAGCTTAGCATGGAGGCGCAAGTTTGGCAGGCAAAGGCTCGGGCACAGGAGGCGACGGCGGCCTCGCTGCAAGCACAGCTGCAGCAGGCTATGATGAGCGGAGGAGGGTGCTCACAGGATAGGCGTGGGGAGGAGGGGCTAGGATGCGCGGTGGGCGCAGAGGGTGGGGGATGCAGCGGGCAAGCGGAGGACGCTGAGTCGGCGTATATCGACCCGGAACGAGTGAAATCGTCAGGACCGATGTGCAAAGCGTGTAGGAAGAGAGTGGCGTCAGTGGTGCTGTTGCCGTGTCGGCATTTCTGCATCTGTACACAATGTGACGGCGTGGTACAAGCCTGCCCTCTTTGCCTCTCCCTCAGAGATTCCAGTGTTGAAGTCTTTCTTTCTTAA 1014 0.5631 MAVQAQYPSNVLLLNRGVQDGKIDCSLQPQPGGFLDQSHMLFNNGVVANSRKRGREVFGNTNTGGVVAPTVNSFPLQPQPSQLIDLSVLHNHQPNVVSTGLRLAFGEQHLQHPQQQQQQQQNQQQQSAVLSLLSEDFTAQIKHQRDEIDQFLRAQGEQLRRTLAEKRQRHYRALLGAAEESVARRLREKEAEVEKAARCNAELEARAAQLSMEAQVWQAKARAQEATAASLQAQLQQAMMSGGGCSQDRRGEEGLGCAVGAEGGGCSGQAEDAESAYIDPERVKSSGPMCKACRKRVASVVLLPCRHFCICTQCDGVVQACPLCLSLRDSSVEVFLS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0663 337 ProSiteProfiles Zinc finger RING-type profile. 290 324 IPR001841 -
Vvi2g0663 337 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 272 336 - -
Vvi2g0663 337 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 44 334 IPR017066 -
Vvi2g0663 337 PIRSF SBP1_RNase_bind 1 337 IPR017066 -
Vvi2g0663 337 CDD mRING-HC-C3HC5_CGRF1-like 288 324 - -
Vvi2g0663 337 Pfam Zinc finger, C3HC4 type (RING finger) 289 324 - -
Vvi2g0663 337 Coils Coil 186 220 - -
Vvi2g0663 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 337 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0663 Vvi-Chr2 6021923 6023224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0663 289 324 Miscellaneous Gene Families AT2G21380 44.444 1.99e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0663 K19042 - vvi:100265998 572.778