Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0661 ATGCACCATCTTGGAAAACCGATCAACCATAACAAGTATAAAATCAAATCCTTAGTGATCAAGTTCAAAATCCATGCTTCACAAGGTTTGGTTGGATCAGGTAAAGGAGATGTAGAGCTCACAAATATGCAGTTGAAGCCGGAGGCACTCAATGCATTGAAATTGCCAGTAAAGGTTAAGGCAGGATTTCTTGGATCAGTGAAGCTTAAGGTTCCATGGAGCAGGCTTGGCCAAGATCCAGTTTTAGTTTACCTGGATCGGATTTTTTTATTAGCTGAACCCGCAACTCAAGTTGAAGGATTTACAGAAGATGCTATTCAGGAAGCTAAAAGAAGCCGAGTGCGGGAAATGGAAACAAGGCTATTGGAGAGGACACGTCAATTAAAGTCAGAGATGAATAAATCATGGCTGGGATCCTTGGTCGATACTATAATTGGAAACCTGAAGCTTTCTATTTCGAACATTCACATCAGATATGAGGATCTTGAGAGCAATCCTGGTCACCCATTTGCAGCTGGTGTAACCTTGGAGAAACTTTCAGCCGTTACAATTGATGATAGTGGGAAGGAAACTTTTGTTACAGGAGGTGCACTGGAGTGTATTCAGAAGTCTGTGGAACTTGAACGACTTGCTTGTTATTTGGATTCTGATATTTATCCGTGGCATGTTGACAAACCGTGGGAGGATTTGCTTCCTTGGGAATGGGTTCAGGTTTTCAAATTTGGTACTAAGGATGGAAAACCAGCTGATCATGTGATAAAAAAGCACACCTACATTCTGCAACCCATTACTGGGAATGCGAAGTACTCAAAACTGCGGTCCAGTGAATCTGCTAACAGAGGTCAACCATTACAGAAAGCATCAGTGAATTTGGATGATGTGACACTCTGTTTGCCAAAGGATGGCTATAGGGATATTTTAAAATTAGCTGATAACTTTGCTTCTTTTAACCAACGCTTGAAAAATGCTCATTACCGGCCACTCGTGTTGGTGAAATCTGATCCAAGGTCCTGGTGGAAGTATGCCTATAGAGCTGTTTCTGATCAAATGAAGAAGGCAAGTGGCAGATTGTCATGGGAGCAGGTCCTGAAGTATGCATACTTACGTAAGAAATATATATCTCTTTATGCTTCGCTTCTCAAATCTGATCTAAGTCGGGCCATAGTTGATGATAACAAAGACATTGAGGAAATAGATCGTGGACTTGATATTGAACTAATACTTCAGTGGAGGATGTTGGCTCACAAGTTTGTGGAGCAGTCAGCAGAATCGAGCCTATACTTGAGAAAACAAAAAGAAAAGAAATCATGGTGGTCATTTGGATGGAGTGGTCAATCCCTTAAGGACGAAAATGAAAGTGAACCATTGCGTTTCAGTGAGGAAGACTGGGAACAATTAAACAAAATCATAGGATACAGGGAAGGGGAAGATGGGCAGTCTCTGATAACCCATGACCAAGGTGATGTTCTTCATACTTCCTTGGAGGTTCACATGAACCATAATGCTTCAAAGCTTATGGGTGATGCTCAGGAGTGTCTCGCTGAGTTGTCCTGTGAAAGCCTTGATTGTTCCATAAGGCTCTATTCAGAGGCAAAAGTTTTTGACATGAAATTGGGATCATATCGGTTGTCATCACCAAATGGTCTCCTTGCTGAGAGTGCAACTGCTTATGATTCTTTGGTTGGTGTCTTCCGCTATAAGCCTTTTGATGCTAAAGTGGACTGGAGCATTGTTGCTAAAGCTTCTCCTTGTTACATGACTTATCTAAAGGAGTCAATTGATCAAATTATCGATTTCTTTGGAAGCAATACTGCTGTTAGTCAGACTATAGCTGTGGAAACTGCAGCGGCGGTACAGATGACAATTGATGGTGTTAAGCGCACTGCTCAGCAACAAGTGAATAAAGCATTGAAGGATCATTCCAGGTTTTTGTTGGATTTGGATATTGCAGCTCCTAAGATCATTATTCCTACCGATTTCCGTCCGGACAACAATAATTCAACAAAACTTTTCCTTGACTTGGGAAATCTGGTGATTCGGACAGAGGATGATTCTGAATGGGGTTCACCCGAGGAGATGTACATGTACTTACAATTCAATTTGGTTTTGAGTGATGTATCTGCTTGCTTGGTGGATGGCGACTACCTTTGGAGTCAAACACATTTAAACAGTGTTGATGACTCTTCTCACTTAAGTGGTGTTACTTTCTGGCCTGTTATTGATAAGTGTGGGGTAATCCTAAAGCTTCAACAGATCCGACTAGAGAACCCATCCTACCCTTCAACAAGACTTGCTGTGCGAATGCCATCATTAGGATTCCATTTTTCACCAGCTCGGTATCATCGATTGATGCAAGTAGCAAAGATCTTTGAGGAGGAAGATGGCAAGAAGTCAGATCTTCTTCGCCCTTGGAATCAAGCTGATTTTGAGGGGTGGTTGTCTCATCTTATATGGAAGGGTGTGGGAAATAGGGAAGCTGTATGGCAGCGGAGGTACTTCTGTCTTGTTGGGCCTTTTCTTTATGCCCTTGAAAGCCCTGGCTCTAAATCCTACAAGCACTATATCAGCTTACGAGGAAAACAACTATATCTTGTTCCTCCAGAGTTTGTTGGTAATGTGGAACATGTATTGGCTATTTGTGATGCGGCACGATCCAATAGCAAGGTTGTGGAAGATGCAAATGCCCTAATACTACGTTGTGATTCTGATGATTCAAGGAAAACTTGGCAAAGTCGCTTACAGGGGGCTATTTATCGTGCATCGGGTTCTGCGCCTATCACAAGTCTATCGGAAACTTCATCAGATCCTGAAGACTCAGACATTGACAACAATAATGTAATGGATATGTCAATGATAGAGAGTGTTTTTATCACTGGAGTTCTTGATGAACTAAAAGTCTGCTTTAATTATAATTCTCTGCATGATCAAAATTACGTGGAGGTACTTCTAGCTGAAGAGAGCCGTTTATTTGAATTCCGAGCAATAGGTGGTCAGGTGGAGCTTTCAATTAGAGCAAATGACATGTTCATTGGAACCCTTCTGAAATCTTTGGAGATTGAAGATTTAGTTTGTGGCAAGGGAGTGTCTCAGCCTTGTTATCTGGCAAGATCATTCATCGGGAGCGTAGATGTGCCTTCATCATTTGAAGATGCTGGAAATCCAAGTTATGACAACAATGGTTTGACTCAAAATGAAGGAGATGATAAATTCTTTGAAGCACCAGAGGATCTGATTGATTTTGTTGATTGTCCAATGCAGTCTTCGGGGGGCAAACACCTAAGTTCTCAAAGTCAAAACTCATTTCCACCTGAAAAACCATTGTTAAAGCCCCCTAGTTTTAGTCGTGTTGCTGGTCTACTTCCTGCTGAGGCCCTTCAAACTAGGAGGGACATAGATCTTACTGACGCATTAGATAGTTTTGTGAAAGCTCAAATAATTATTTATGACCGGAACACTCCTTTGTATAATAATGTTGATAAGCAGGTAATTGTGACACTTGCTACATTGTCATTTTTCTGTCGTAGACCAACGGTTCTTGCCATCATGGAATTTGTTGATGCTATTAACGCTAAGGATGAAGCATGTGAATCTTTTAGTGACAATTCCCCTATTGTGCAAAGAGGAGTCTTGGAGGAGGAGATGGATGATAATCAATTGATGGTTGAGGAGCCTGTTGTCAAAGGTTTGCTAGGAAAGGGGAAATCCAGAATCATTTTCTATTTAACATTGAATATGGCTCGTGCTCAGATCCTGTTGATGAATGAAAATGAAACTAAGCTAGCTAGTCTGTCACAGGATAATCTGCTTACCGATATTAAGGTGTTTCCATCATCTTTTAGTATAAAGGCAGCTCTCGGAAATGTAAGGATCAGTGATGACAGTCTTCATAGCAGCCATATTTTTTTCTGGATTTGTGATATGAGAAATCCTGGGGGGAGTTCGTTTGTTGAGTTGGTCTTTAGTTCATTCAGTGCTGATGATGAAGATTATGAGGGTTATGATTATAGCCTATTTGGACAGCTTTCAGAAGTGCGTCTTGTCTATTTGAATCGTTTTGTCCAGGAGGTTGTTAGTTACTTTGTGGGTCTTGTTCCCAACAATTCAAAGGGTGTCGTGAAATTAAGAGATCAAGTAACAAATTCAGAGAAGTGGTTTACTACAAGTGAGATTGAAGGTTCACCCGCTGTGAAGTTGGATCTTTCACTTAGAAAGCCTATAATATTAATGCCTCGGAGAACAGACAGCCTTGATTACTTGAAGCTTGATGTCGTTCATATAACCATCCAGAACACCTTTCAATGGTTTCATGGCAGTAAAAACGAAATTAATGCTGTTCATTTGGAAATTTTGACAGTTCTGGTTGAGGACATCAATTTAAATGTTGGTACTGGCAAAGAATTAGGTGAAAGTATAATACAAGATGTGAAAGGGGTTTCTGTTGTGATCCGGAGGTCTCTTCGAGACCTGTTGCATCAGATACCAAGTACTGAAGCTGTCATTAAGATAGAGGAACTGAAAGCTGCTCTATCAAACAGAGAATACCAGATAATTACTGAATGTGCATCGTCTAATGTCTCGGAGACCCCAAATATTGTGCCCCCACTGAATAATGATTCTGTGACACCTTCAGTTGATGCAGCTGAACCTCTAGCTTCTCAGGATCCTGATGCTGCTGAAAATGGAACTCAAAATGGAGAGAGCTGGATTGCTTTGAAAGTTTCTGTCTTTGTTAATCTCGTTGAGTTATGCTTACATGCAGGGATAGCAAGAGATACGTCTCTGGCCACTGTGCAGGTATTCACCTGTTGTAGGTTTTTTCCTTGCTAG 4827 0.4106 MHHLGKPINHNKYKIKSLVIKFKIHASQGLVGSGKGDVELTNMQLKPEALNALKLPVKVKAGFLGSVKLKVPWSRLGQDPVLVYLDRIFLLAEPATQVEGFTEDAIQEAKRSRVREMETRLLERTRQLKSEMNKSWLGSLVDTIIGNLKLSISNIHIRYEDLESNPGHPFAAGVTLEKLSAVTIDDSGKETFVTGGALECIQKSVELERLACYLDSDIYPWHVDKPWEDLLPWEWVQVFKFGTKDGKPADHVIKKHTYILQPITGNAKYSKLRSSESANRGQPLQKASVNLDDVTLCLPKDGYRDILKLADNFASFNQRLKNAHYRPLVLVKSDPRSWWKYAYRAVSDQMKKASGRLSWEQVLKYAYLRKKYISLYASLLKSDLSRAIVDDNKDIEEIDRGLDIELILQWRMLAHKFVEQSAESSLYLRKQKEKKSWWSFGWSGQSLKDENESEPLRFSEEDWEQLNKIIGYREGEDGQSLITHDQGDVLHTSLEVHMNHNASKLMGDAQECLAELSCESLDCSIRLYSEAKVFDMKLGSYRLSSPNGLLAESATAYDSLVGVFRYKPFDAKVDWSIVAKASPCYMTYLKESIDQIIDFFGSNTAVSQTIAVETAAAVQMTIDGVKRTAQQQVNKALKDHSRFLLDLDIAAPKIIIPTDFRPDNNNSTKLFLDLGNLVIRTEDDSEWGSPEEMYMYLQFNLVLSDVSACLVDGDYLWSQTHLNSVDDSSHLSGVTFWPVIDKCGVILKLQQIRLENPSYPSTRLAVRMPSLGFHFSPARYHRLMQVAKIFEEEDGKKSDLLRPWNQADFEGWLSHLIWKGVGNREAVWQRRYFCLVGPFLYALESPGSKSYKHYISLRGKQLYLVPPEFVGNVEHVLAICDAARSNSKVVEDANALILRCDSDDSRKTWQSRLQGAIYRASGSAPITSLSETSSDPEDSDIDNNNVMDMSMIESVFITGVLDELKVCFNYNSLHDQNYVEVLLAEESRLFEFRAIGGQVELSIRANDMFIGTLLKSLEIEDLVCGKGVSQPCYLARSFIGSVDVPSSFEDAGNPSYDNNGLTQNEGDDKFFEAPEDLIDFVDCPMQSSGGKHLSSQSQNSFPPEKPLLKPPSFSRVAGLLPAEALQTRRDIDLTDALDSFVKAQIIIYDRNTPLYNNVDKQVIVTLATLSFFCRRPTVLAIMEFVDAINAKDEACESFSDNSPIVQRGVLEEEMDDNQLMVEEPVVKGLLGKGKSRIIFYLTLNMARAQILLMNENETKLASLSQDNLLTDIKVFPSSFSIKAALGNVRISDDSLHSSHIFFWICDMRNPGGSSFVELVFSSFSADDEDYEGYDYSLFGQLSEVRLVYLNRFVQEVVSYFVGLVPNNSKGVVKLRDQVTNSEKWFTTSEIEGSPAVKLDLSLRKPIILMPRRTDSLDYLKLDVVHITIQNTFQWFHGSKNEINAVHLEILTVLVEDINLNVGTGKELGESIIQDVKGVSVVIRRSLRDLLHQIPSTEAVIKIEELKAALSNREYQIITECASSNVSETPNIVPPLNNDSVTPSVDAAEPLASQDPDAAENGTQNGESWIALKVSVFVNLVELCLHAGIARDTSLATVQVFTCCRFFPC* 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0661 1608 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 35 1599 - -
Vvi2g0661 1608 Pfam Repeating coiled region of VPS13 565 787 IPR031642 -
Vvi2g0661 1608 ProSiteProfiles PH domain profile. 806 918 IPR001849 -
Vvi2g0661 1608 Gene3D - 804 921 IPR011993 -
Vvi2g0661 1608 SMART PH_update 807 920 IPR001849 -
Vvi2g0661 1608 Pfam Vacuolar sorting-associated protein 13, N-terminal 136 377 IPR031646 -
Vvi2g0661 1608 Pfam PH domain 809 917 IPR001849 -
Vvi2g0661 1608 Pfam N-terminal region of Chorein or VPS13 30 111 IPR026854 -
Vvi2g0661 1608 SUPERFAMILY PH domain-like 800 922 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0661 Vvi-Chr2 5915695 5994281 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0661 K19525 - vvi:100260794 3090.83