Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0658 ATGACTTTCTTTCTACTTTCTTCTCAGCGCACTTTTGAGGCAGCTTATCAAATGTTGGGTAAAGGTTTTGTGGAGATGCGGAATGTACAGTTGTGTGATCCTATTGGATTCTTTTCAGCTCCTTTGAAGCAGATAGCTGGAAATATTCAGGAGACATTATATTCTGATGATTATTTAAATGAATTGACCTGGATGGAGTTATATGCAGCAGAATTTATGAGATCAACTCAAACAGATAAAAGTAAGAGCACATGTGGCAGAATAAGATGTGCCATCCTTTTGTCACCCATGTCTGAAGTTGAAAAGAGCGAGCAATCTTTTGGTGGCAGAAACTCTGGATTTATTCAAATCAGTCCTTCAAGGGAAGGGCCATGGACGAGTGTGAGGCTAAACTATGCTGCACGTGCTGCTTGTTGGCGCTTAGGCAATGATGTTGTTGCTAGTGAAGTAAGTGTGAACGATGGCAACATATATGTCACTATTAGGCCTCTGGTTTCAGTGTGTAACAAAACAGATTTTGTACTTGACTTGTGCCTCTACCCCAAGGCTCCTAGTGAAAGCATGAGACAATTAAATGATGCAATGAAGTCCAAAGGGATACAAATTGATGGTAACAGACTAGAAACAGATGAGTTTTTTGAAACAGAAAAGTACAACCCAACCACTGGCTGGGTTCCTTGTTTGGTTCAACCAAACCAAGATCGGTCGGGTGCTGAAGGATCTCATCAGGCAATTTCTGGAGTTGAGTTGCCATCAGGTTGGGAATGGATTGGTGATTGGAAATTAGACAAGACATCTGTTAACACGGCTGATGGGTGGGTTTATGCTCCAAACCTTGAAAGTCTGAAATGGCCTGAGTCATATAATCCTATAAAGTTTGTGAACCATGCAAGGCAAAGGAGATGGGTCCGGAAAAGGAAATGGATTTCAGGTGATGTAAAGCAGCAGATATCTGTTGGATTACTGAAGCCTGGAGACACTGTTCCCCTACCTCTGTCAGGCTTGACACAATCTGGATTGTATTATTTGCAATTGAGACCTTCAAATCTTAATAACCCTGATGAATATTCCTGGAGTTCAGTGGCAGGCCGGCCTGGTCGACCAGAGGATTCTGGTACACCTAAAGAATATTCTGAAATATGTGTTTCAACTCTTACTGAATCAGATGAGCTCTTGTGCTGCCCTCCATTAAATGGAACCTCCTCAAATAGTCCTCGTGGCTTGTGGTTTTGCTTGGGCATACAAGCGACAGAGATTGCAAAAGACATTCGCTCTGATCCTATTCAAGATTGGACTCTTGTGGTCAAATCACCACTGTCAATAACCAATTTCCTTCCCATGGCAGCAGAATTTTCTGTTTTTGAAATGCAAGCAAGTGGACATTATATTGCATGCTCCAGAGGAATATTTGGCCCAGGAAAAACTGTAAGAGTTTATGATGCTGACATTAGAAATCCCTTGTACTTTTCACTGTTTCCACAAAGAGGATGGCTGCCAATACAAGAAGCCATTCTTATATCCCATCCTAGCAGAGCTCCATGTAAAACAATGCGCTTAAGAAGTTCAATTTCTGGAAGGATTGTTCAAATCATTGTAGAACAAAACCATGAAAAGGAGCAATCGCTTCTGGAGAAAATCGTTAGAGTGTACGCTCCTTATTGGTTCGCAATTGCTAGGTGTCCCCCACTCACGTTGAGGCTTTTAGATTTAACAGGGAGAAGACAAGAATGGAAGAGTTCTCTCCCATTTCACTCAAAAAAGAATAATGAAGTGATTTTTGAGGAAATAACTGAAGAGGAAATATTCGAAGGCTATACAATTGCTTCTGCATTGAACTTTAAATTGTTGGGCCTATCAGTGTCCATTACTCAATCTGGCGCGGAGCAGTTTGGACCTGTTCAAGATCTTTCACCACTTGGTGACACGGATGCTTCATTGGATCTTAATGCTTATGATGTTGATGGCAAGTGCATGCGACTCTTTATCTCCTCAAAACCTTGCCTTTATCAGTCTGTTCCTACAAAGGTAATTAATATCCGACCATTCATGACATTTACAAATAGACTTGGTGAAGACATTTTTATTAAGTTCAGCAGTGAAGATGATCCAAAGATGCTACATCCAACTGATTCAAGAATACCATTTATATATCGTGAAACAGGTGGACCTGATAAACTCCAGATCCGACTAGAAGATACAGAATGGTCATTTCCTGTGCAAATTGTAAAAGAGGACTCCATCTCTTTGGTTTTAAGGAGACGTGATGGTACTCGGAGATTTTTAAAGACAGAAATTCGGGGTTATGAAGAAGGATCTCGCTTTATAGTTGTATTCCGCCTTGGATCAATAAATGGCCCTGTCAGGATTGAGAACAGATCTGTCAGCAAGACAATTAGCATTTGCCAGTCTGGATTTGGTGATGATGCCTCGATACTGTTGGAGCCTCTTTCAACAACAAATTTTTCTTGGGAGGATCCATATGGCCTAAAAGTTATTGATGCTAAAGTCCACTGTGACAATATTATTGCAGTTTATAAATTCAATCTGGAGAGTACTGGAGAATGTTCTGTCGGGGAGGGGCCACTAAGATTGAAATTCCATGTTGTAGAAATGGGTGATATCAAGGTTGCTAGGTTCACAGATGACTGGACATTAGGGTCAAGTTCCCATGAAGAAATTAGGTTTCTGACACCTGCTGGAAATTGGGGAAACTCACATATGCAGAGCAGGATGCAGAACAATGTGGCACCTGTAGAGCTTATAATCGAGTTGGGAGTTTTTGGGATTTCTATTATAGACCACAGACCAAAAGAGCTCTTATACTTGTACTTGGAGAGCGTGTCCATATCATATTCTACTGGCTATGATGGGGGAACTACAAACAGGTTCAAGCTCATATTCGGGCATTTGCAGCTCGACAATCAGCTTCCTCTAACATTGATGCCTGTCCTGTTGGCACCTGAGCAGCCTGTTGATGTGCATCATCCAGTGTTCAAGATGACTGTTACAATGTGCAATGAGAACACTGATGGTATCCAGGTCTATCCATACGTTTATATACGGGTAACAGAGAAGTGTTGGAGGCTTAGTATTCATGAACCAATTATTTGGTCGTTGGTGGATTTCTACAATAATCTTCAGATAGATCGTGTCCCCCGAAGTTCTAATGTTACAGAAGTTGATCCAGAGATACGCGTGGACCTAATAGATGTTTCGGAAATAAGGCTGAAGGTGTCTTTGGAGACAGCACCAACTCAAAGACCACATGGGGTTCTAGGGATGTGGAGCCCTATTCTTTCAGCTGTGGGAAATGCATTCAAAATTCAGGTGCATTTAAGGAAAGTGATGCACAGAGACAGATTCATGCGGAAAAGTTCTGTCATTCCTGCCATTGGAAACCGCATTTGGAGAGATCTTATCCATAATCCTTTACATTTGATATTTTCTGTAGATGTACTTGGTGCAGCAAGCTCAACGTTGGCTTCTCTTAGTAAAGGGTTTGCTGAGCTCTCAACAGATGGACAGTTTCTACAATTACGTTCAAAGCAGGTATGGTCAAGGAGAATTACTGGGGTGGGTGATGGAATTATCCAAGGAACAGAAGCTCTTGCACAAGGTGTTGCGTTTGGAGTATCTGGAGTAGTGACAAAGCCTGTGGAGAGTGCAAGACAGAATGGCCTCCTAGGACTTGCTAATGGTCTTGGACGAGGTTTCCTGGGATTCATTGTACAGCCAGTTAGTGGAGCTTTAGATTTTTTCTCATTGACTGTTGATGGAATTGGTGCAAGTTGTTCCAGATGCTTAGAGGCTTTGAATAACAAGACCACCTTCCAGAGAATCAGAAACCCCCGGGCTATTCGTGCTGATGGTGTTCTTAGGGAGTATTCTGAGAGAGAAGCTGTTGGACAGATGGTACTTTACCTTGCAGAAGCAAGCCGCCATTTTGGCTGTACTGAAATATTCAAGGAGCCCTCAAAATTTGCCTGGTCTGATTACTATGAAGACCACTTTTCCGTGCCTTACCAAAGAATTGTTTTAATAACCAATAAGCGAGTCATGCTGCTGCAGTGTCTGGCTCCAGATAAGATGGATAAGAAACCTTGCAAGATTATTTGGGATGTCCCCTGGGAAGAACTCATGGCAGTGGAGTTGGCAAAAGCAGGCTCTCCTAGACCCTCTCACTTAATTCTCCACCTCAGAAATTTTAAGAGATCAGAAAACTTTGCTCGAGTCATTAAGTGCACTGTTGAAGAAGAATCAAGTGAAGGGGAACCTCAAGCTGTTAGGATCTCTTCAGTAGTGCGTAAGATGTGGAAAGCATTCCAGTCTGACATGAAAAGTCTGATTTTAAAGGTTCCTTCAAGCCAGAGACATGTGTATTTTGCTTGGAGTGAATCGCATGGAAAAGACCCATATATGCAGAATAAATCCATTATTCAGTCAAGAGAGCTCTCTTCATTTTGTTCCACATCTGATGAAAGAAGATTTGTTAAACATAGTATCAACTTTTTGAAGATCTGGAGCAGCGAACAAAACTCAAAAGGTCGATGCACGCTGTGCAGGATGCAGATTTCAGAAGATGGTGGAATCTGCAGCATTTGGAGACCAGTCTGCCCTGACGGGTATGTCTCTATTGGGGATGTTGCTCGTGTTGGCTGCCACCCTCCAAATGTCGCTGCTGTTTATCATAATGTTGGCAAACGATTTGCCCTTCCAGTGGGTTATGACCTGGTGTGGAGAAACTGCCCAGATGACTACATAAACCCAGTGTCAATTTGGTATCCAAGGGCTCCAGAAGGATTTGTTTCTCTTGGATGTGTTGTTGTGGCAGATTTCATTGAACCGGAACCCAGTTTAGCATATTGTGTTGCAGAATCCCTTGCTGAGGAAACTGTATTTGAAGAACAAAAGGTATGGTCTGCACCTGATTCATACCCATGGGCATGTCATATTTATCAAGTCCAAAGTGATGCTCTCCATCTTGTGGCGCTAAGACAGCCTCAAGAAGAATCTGAATGGAAGCCCATGAGGGTTGTTGATGACTCCCAGCAACCTCTGCAACCTTCAGAAGCTGAATAA 5079 0.4229 MTFFLLSSQRTFEAAYQMLGKGFVEMRNVQLCDPIGFFSAPLKQIAGNIQETLYSDDYLNELTWMELYAAEFMRSTQTDKSKSTCGRIRCAILLSPMSEVEKSEQSFGGRNSGFIQISPSREGPWTSVRLNYAARAACWRLGNDVVASEVSVNDGNIYVTIRPLVSVCNKTDFVLDLCLYPKAPSESMRQLNDAMKSKGIQIDGNRLETDEFFETEKYNPTTGWVPCLVQPNQDRSGAEGSHQAISGVELPSGWEWIGDWKLDKTSVNTADGWVYAPNLESLKWPESYNPIKFVNHARQRRWVRKRKWISGDVKQQISVGLLKPGDTVPLPLSGLTQSGLYYLQLRPSNLNNPDEYSWSSVAGRPGRPEDSGTPKEYSEICVSTLTESDELLCCPPLNGTSSNSPRGLWFCLGIQATEIAKDIRSDPIQDWTLVVKSPLSITNFLPMAAEFSVFEMQASGHYIACSRGIFGPGKTVRVYDADIRNPLYFSLFPQRGWLPIQEAILISHPSRAPCKTMRLRSSISGRIVQIIVEQNHEKEQSLLEKIVRVYAPYWFAIARCPPLTLRLLDLTGRRQEWKSSLPFHSKKNNEVIFEEITEEEIFEGYTIASALNFKLLGLSVSITQSGAEQFGPVQDLSPLGDTDASLDLNAYDVDGKCMRLFISSKPCLYQSVPTKVINIRPFMTFTNRLGEDIFIKFSSEDDPKMLHPTDSRIPFIYRETGGPDKLQIRLEDTEWSFPVQIVKEDSISLVLRRRDGTRRFLKTEIRGYEEGSRFIVVFRLGSINGPVRIENRSVSKTISICQSGFGDDASILLEPLSTTNFSWEDPYGLKVIDAKVHCDNIIAVYKFNLESTGECSVGEGPLRLKFHVVEMGDIKVARFTDDWTLGSSSHEEIRFLTPAGNWGNSHMQSRMQNNVAPVELIIELGVFGISIIDHRPKELLYLYLESVSISYSTGYDGGTTNRFKLIFGHLQLDNQLPLTLMPVLLAPEQPVDVHHPVFKMTVTMCNENTDGIQVYPYVYIRVTEKCWRLSIHEPIIWSLVDFYNNLQIDRVPRSSNVTEVDPEIRVDLIDVSEIRLKVSLETAPTQRPHGVLGMWSPILSAVGNAFKIQVHLRKVMHRDRFMRKSSVIPAIGNRIWRDLIHNPLHLIFSVDVLGAASSTLASLSKGFAELSTDGQFLQLRSKQVWSRRITGVGDGIIQGTEALAQGVAFGVSGVVTKPVESARQNGLLGLANGLGRGFLGFIVQPVSGALDFFSLTVDGIGASCSRCLEALNNKTTFQRIRNPRAIRADGVLREYSEREAVGQMVLYLAEASRHFGCTEIFKEPSKFAWSDYYEDHFSVPYQRIVLITNKRVMLLQCLAPDKMDKKPCKIIWDVPWEELMAVELAKAGSPRPSHLILHLRNFKRSENFARVIKCTVEEESSEGEPQAVRISSVVRKMWKAFQSDMKSLILKVPSSQRHVYFAWSESHGKDPYMQNKSIIQSRELSSFCSTSDERRFVKHSINFLKIWSSEQNSKGRCTLCRMQISEDGGICSIWRPVCPDGYVSIGDVARVGCHPPNVAAVYHNVGKRFALPVGYDLVWRNCPDDYINPVSIWYPRAPEGFVSLGCVVVADFIEPEPSLAYCVAESLAEETVFEEQKVWSAPDSYPWACHIYQVQSDALHLVALRQPQEESEWKPMRVVDDSQQPLQPSEAE* 1693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0658 1692 Pfam SHR-binding domain of vacuolar-sorting associated protein 13 660 827 IPR009543 -
Vvi2g0658 1692 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13 36 1429 IPR026847 -
Vvi2g0658 1692 Pfam Integral peroxisomal membrane peroxin 211 304 IPR010482 -
Vvi2g0658 1692 MobiDBLite consensus disorder prediction 1671 1692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0658 Vvi-Chr2 5827251 5866553 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0658 K19525 - vvi:100260794 3328.88