Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0656 ATGGCTTTGACATTACGCTCTTCTACTTCTTTCATCAATCCAAAAGACACCAAAGGCCTCAAAACTCCAGACATCTCCAGCTCAATTTTCTTCACACCAAGCAAGCCTCCATGCAGTATCCGAGCAAAGATCTCAACGCAAGAAGCACATCTCTGCCATGAGAATGCCATGGTATCAGAAGGAAGGAAAAATCAAGTCCTTCATGGGCTGCCAACACCACATAATAAAAATGGTTCAAGGGTGCCAGTGTTTGTCATGTTGCCCCTTGACACAGTCTCCTTCGGAGGGAACTTGAACAAGCCACGTGCCATGAACGCTAGCTTGATGGCTCTGAAAAGTTCAGGAGTGGAAGGAGTCATGGTAGACGCTTGGTGGGGGTTGGTAGAGAAAGATGGACCTATGAAGTATAACTGGGAAGGGTATGCTGAGCTTGTGCAGATGGTGCAAAGGCATGGACTAAAGCTCCAAGTTGTCATGTCTTTTCATCAGTGTGGAGGGAATGTTGGAGACTCTTGCAGCATTCCGCTGCCTCCATGGGTTCTTGAAGAAATCAGCAAGAATACGGATCTTGTCTATACAGACAGGTCAGGCCGGAGAAATCCAGAATACATCTCATTGGGTTGTGATTCAATACCTGTGCTCAGAGGACGAACACCCATCCAGGTCTATTCTGATTATATGAGGAGCTTCCACAACCGATTCAAAGATTATTTAGGCGGGGTTATTGCGGAAATTCAAGTGGGGATGGGCCCCTGTGGAGAGTTGAGATATCCATCTTATCCAGAAAGCAATGGGACTTGGAGATTTCCTGGAATTGGGGAATTCCAATGCTATGACAAGTACATGAGAGCTTCACTGGAAGCATCAGCAGACGCAGTGGGGAAGAAAGATTGGGGAAGAAGTGGCCCTCAGGATGCTGGCCACTACAACCAGTTCCCTGAAGATACCGGGTTCTTCAGGAGAGACGGTACATGGACCACAGAATACGGACAGTTCTTCCTAAAATGGTACTCTGGAAAGCTACTTGAGCATGGAGACAGAATCCTAGCAGCTGCCGAAGGAATATTCCAGGGAACTGGAGCAAAACTCTCAGGAAAAGTAGCTGGAATTCACTGGCATTACAAAACAAGGTCTCATGCGGCTGAATTAACTGCTGGATACTACAACACCAGAAATCATGATGGCTACCTCCCCATTGCCAGAATGATGGGCAAATATGGAGTTGTATTGAACTTCACATGCATGGAGATGAAGGACAGGGAGCAGCAAGAGCATGCAAATTGCTCCCCAGAAGGCTTGGTCCGGCAAGTAAAGATGGCGACTAAGACTGCAGGAACAGAACTTGCTGGAGAGAATGCACTGGAGAGGTATGATTCCAGCGCCTATGCACAAGTTTTGGCAACAAGCAGGTCAGATTCTGGCAATGGGTTGAGCGCATTTACATATCTAAGAATGAATAAAAGGCTGTTCGAAGGGGATAATTGGCGAAGCTTGGTCGAATTTGTAAGGAACATGTCAGAAGGCGGCCGGAACAGACTTCCAGAGTGTGACTCTAGCGGGACAGACCTTTACATTGGATTTATCAAAAAGAAGAAAGATGTTGCGAAGACGATGGAGGCTGCTCTTGTGTAA 1632 0.4688 MALTLRSSTSFINPKDTKGLKTPDISSSIFFTPSKPPCSIRAKISTQEAHLCHENAMVSEGRKNQVLHGLPTPHNKNGSRVPVFVMLPLDTVSFGGNLNKPRAMNASLMALKSSGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNTDLVYTDRSGRRNPEYISLGCDSIPVLRGRTPIQVYSDYMRSFHNRFKDYLGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASADAVGKKDWGRSGPQDAGHYNQFPEDTGFFRRDGTWTTEYGQFFLKWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYKTRSHAAELTAGYYNTRNHDGYLPIARMMGKYGVVLNFTCMEMKDREQQEHANCSPEGLVRQVKMATKTAGTELAGENALERYDSSAYAQVLATSRSDSGNGLSAFTYLRMNKRLFEGDNWRSLVEFVRNMSEGGRNRLPECDSSGTDLYIGFIKKKKDVAKTMEAALV* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0656 543 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 64 510 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 ProSitePatterns Beta-amylase active site 1. 162 170 IPR018238 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 325 344 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 250 272 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 136 154 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 115 129 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 158 179 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 361 377 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 396 419 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 378 389 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 433 455 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 Gene3D Glycosidases 73 537 - -
Vvi2g0656 543 Pfam Glycosyl hydrolase family 14 84 501 IPR001554 GO:0000272|GO:0016161
Vvi2g0656 543 SUPERFAMILY (Trans)glycosidases 80 508 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0656 Vvi-Chr2 5804364 5806981 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0656 1 543 Glycoside Hydrolase AT4G17090 74.909 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0656 K01177 - vvi:100247246 1125.15