Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0653 ATGTCTTCGTTGGCTGGAATCAGCGAGGAGCTGGCGGAGATCGATGGACAAATTAGTGACATTTTCCGCGCGTTATCTAATGGGTTCCAGAAGTTGGAGAAGATCAAAGACACGAGTAGGCAGAGCAGGCAGCTGGAAGAGCTTACGGGGAAGATGAGAGAGTGTAAGAGGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATGATAAAAGAGTTGAATTCGTATGTTGCTCTTAAAAAGCAATATGCAACCAATCTTGAAAACAAGCGAATTGATCTCTTTGATGCGCCTGCTGATGACGTTGGAGAAGAAAATGTTTTGCTAGCTTCATCTATGACAAATCAACAGCTAATGGATAATGGAAATCGGATGATGGATGAGACTGATCAAGTCATTGAGAGATCAAAAAAGGTTGTTCAAGATACAGTTAATGTTGGAACAGAAACTGCAGCAGCTCTCAAGTCGCAGACTGAACAAATGAGCAGGATTGTTAACGAGCTAGATTCTATCCATTTCTCAATCAAGAAAGCTTCACAGCTGGTCAAGGAAATTGGTAGGCAGGTTGCCACTGATCGGTGTATTATGGCCTTGCTCTTCATTCTAGTCATTGGGGTCATAGCCGTCATTATTGTGAAGCTTGTGAACCCAAATAACAAGGACATTCGGGATGTTCCTGGATTGGCCCCACCAGCTCTCACTCGGAAATTACTTTGGCATCCTAATTAA 786 0.4186 MSSLAGISEELAEIDGQISDIFRALSNGFQKLEKIKDTSRQSRQLEELTGKMRECKRLIKEFDREVKDLEIRNDPETNKMLNEKKQSMIKELNSYVALKKQYATNLENKRIDLFDAPADDVGEENVLLASSMTNQQLMDNGNRMMDETDQVIERSKKVVQDTVNVGTETAAALKSQTEQMSRIVNELDSIHFSIKKASQLVKEIGRQVATDRCIMALLFILVIGVIAVIIVKLVNPNNKDIRDVPGLAPPALTRKLLWHPN* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0653 261 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 19 230 - -
Vvi2g0653 261 Pfam Sec20 152 232 IPR005606 GO:0005484|GO:0006890
Vvi2g0653 261 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Vvi2g0653 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Vvi2g0653 261 Coils Coil 45 72 - -
Vvi2g0653 261 SUPERFAMILY SNARE fusion complex 132 205 - -
Vvi2g0653 261 Gene3D - 133 212 - -
Vvi2g0653 261 SMART tSNARE_6 137 204 IPR000727 -
Vvi2g0653 261 FunFam novel plant SNARE 11 133 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0653 Vvi-Chr2 5758099 5775361 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0653 K08494 - vvi:100259220 488.804