Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0649 ATGTACAGGGAAAGGGGTGTTGCCGCTGCTGGATCCAAGGCTGAGATGGCCTCAATTGATCGGAAGAGAATCAATGATGCGCTGGACAAGCACTTGGAGCGGTCGTCGCCTTCCACGTCCAAGGGATTGAACGGCAAGGATAAGGACAGAGTATCGGCGCAGTCTACTCTGATAGAGGAATCTGAAACAGACACTGAAGAGTCAGATGTTAGTGGCTCTGATGGGGATGATGCATCATGGATCTCATGGTTTTGCCATATGCGAGGGCATGAGTTCTTCTGTGAAGTTGACGATGATTACATCCAAGATGACTTTAACCTCTGTGGTTTGAGCAGTCAAGTTCCTTATTATGATTATGCACTTGACTTGATTTTGGATGTTGAATCCTCGCATGGTGATTCCTTCACAGAGGAACAAAATGAATTAGTGGAATCAGCAGCAGAGATGCTTTATGGTTTGATTCATGTCCGTTACATATTGACCAGCAAAGGACTGGCTGCAATGCTGGACAAGTACAAGGACTGTGACTTTGGTAGATGCCCAAGAGTTTACTGCTGCGGACAAGCCTGCCTTCCAGTAGGTTTATCAGACATTCCTCGATCAAGCACAGTAAATGTCTACTGTCCCAAATGCGAAGATATTTACTATCCTCGTTCCAAGTCCCAAGGTGACATTGATGGAGCCTATTTTGGAACCACATTTCCTCACCTGTTCTTGATGACATATGGGCACCTCAAACCACAAAAGGCATCTCAGAGCTATGTTCCTAGAGTATTTGGATTCAAGATGCACAAGCCTTAA 801 0.4544 MYRERGVAAAGSKAEMASIDRKRINDALDKHLERSSPSTSKGLNGKDKDRVSAQSTLIEESETDTEESDVSGSDGDDASWISWFCHMRGHEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDSFTEEQNELVESAAEMLYGLIHVRYILTSKGLAAMLDKYKDCDFGRCPRVYCCGQACLPVGLSDIPRSSTVNVYCPKCEDIYYPRSKSQGDIDGAYFGTTFPHLFLMTYGHLKPQKASQSYVPRVFGFKMHKP* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0649 266 PRINTS Casein kinase II regulatory subunit family signature 226 243 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 PRINTS Casein kinase II regulatory subunit family signature 176 197 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 PRINTS Casein kinase II regulatory subunit family signature 151 172 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 PRINTS Casein kinase II regulatory subunit family signature 79 95 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 PRINTS Casein kinase II regulatory subunit family signature 96 110 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 PRINTS Casein kinase II regulatory subunit family signature 198 219 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 72 176 IPR016149 GO:0005956|GO:0019887
Vvi2g0649 266 Pfam Casein kinase II regulatory subunit 79 262 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 SMART CK_II_beta_2 79 262 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 SUPERFAMILY Casein kinase II beta subunit 77 265 IPR035991 GO:0005956|GO:0019887
Vvi2g0649 266 Gene3D - 177 251 - -
Vvi2g0649 266 PANTHER CASEIN KINASE II SUBUNIT BETA 59 265 IPR000704 GO:0005956|GO:0019887
Vvi2g0649 266 FunFam Casein kinase II subunit beta 72 176 - -
Vvi2g0649 266 FunFam Casein kinase II subunit beta 177 251 - -
Vvi2g0649 266 MobiDBLite consensus disorder prediction 28 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0649 Vvi-Chr2 5692827 5700708 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0649 K03115 - vvi:100262569 531.561