LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0637	ATGGGCTGCTTTCAGTCAACAGCAAGAAAGCAGTTTCCTGGACATGAGGACCCAGTAATTCTTGCTTCCCAAACAGCTTTTAGTGTGAGTGAAGTTGAAGCACTATTTGAGCTATTCAAGAGCATTAGCAGTTCTGTAATTGATGATGGGTTAATAAACAAGGAAGAGTTTCAATTGGCTCTATTCAAGAACAGAAAGAAGGAGAATCTCTTTGCAAATAGGATCTTTGATCTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTTTTCATTCAAGCTCTATGATTTGGATAGCACAGGATTCATTGAGCGGCAAGAGGTCAAACAAATGTTAATTGCACTTCTGTGTGAATCTGAAATGAAGTTGGCTGATGAAACCATCGAGATAATACTTGATAAGACATTCTTGGAAGCTGACGTAAATCAGGATGGGAGGATTGATAAATCTGAGTGGCAGAATTTTGTTTCTCGGAACCCATCATTGTTGAAGATAATGACACTTCCTTATCTAAGGGACATAACGACAACCTTTCCGAGCTTTGTGTTTAATTCAGAGGTGGATGAGATTGCTACATAA	642	0.3863	MGCFQSTARKQFPGHEDPVILASQTAFSVSEVEALFELFKSISSSVIDDGLINKEEFQLALFKNRKKENLFANRIFDLFDVKRKGVIDFGDFVRSLNVFHPNAPQEDKIDFSFKLYDLDSTGFIERQEVKQMLIALLCESEMKLADETIEIILDKTFLEADVNQDGRIDKSEWQNFVSRNPSLLKIMTLPYLRDITTTFPSFVFNSEVDEIAT*	214

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0637	213	SMART	efh_1	152	180	IPR002048	GO:0005509
	Vvi2g0637	213	SMART	efh_1	108	136	IPR002048	GO:0005509
	Vvi2g0637	213	SMART	efh_1	71	99	IPR002048	GO:0005509
	Vvi2g0637	213	Gene3D	-	18	211	-	-
	Vvi2g0637	213	ProSiteProfiles	EF-hand calcium-binding domain profile.	104	139	IPR002048	GO:0005509
	Vvi2g0637	213	PANTHER	CALCINEURIN B	1	210	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Vvi2g0637	213	ProSiteProfiles	EF-hand calcium-binding domain profile.	67	102	IPR002048	GO:0005509
	Vvi2g0637	213	CDD	EFh	108	178	IPR002048	GO:0005509
	Vvi2g0637	213	FunFam	calcineurin B-like protein 3	17	210	-	-
	Vvi2g0637	213	ProSiteProfiles	EF-hand calcium-binding domain profile.	148	183	IPR002048	GO:0005509
	Vvi2g0637	213	ProSitePatterns	EF-hand calcium-binding domain.	161	173	IPR018247	-
	Vvi2g0637	213	ProSitePatterns	EF-hand calcium-binding domain.	117	129	IPR018247	-
	Vvi2g0637	213	Pfam	EF-hand domain pair	107	177	IPR002048	GO:0005509
	Vvi2g0637	213	SUPERFAMILY	EF-hand	21	203	IPR011992	-
	Vvi2g0637	213	PRINTS	Recoverin family signature	168	188	-	-
	Vvi2g0637	213	PRINTS	Recoverin family signature	122	140	-	-
	Vvi2g0637	213	PRINTS	Recoverin family signature	75	96	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0637	Vvi-Chr2	5574398	5598021	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0637	1	213	EF-hand Containing Proteins	AT4G17615	86.854	8.95e-138	382

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0637	K06268		-	vvi:100260894	421.009