Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0619 ATGGTAGGTGAACAGAAAAATGATATTGTGGAACAGCCTGAAAAACCCATGGAGGAGCGTCCGGATTCACAAGTGGGTAAGCCTAGGATGGAGCACTTCGACAATTGGAGGCATGGTATGAAGCGCAGGATGCGGGGCGGTCGAGGTGGGAAGCGTATGAAAATGTTTGAAGCACCAAGGCGATCAATCGAACCTCCTAAACCTAAAGTGGTGATTCCCCTAATATGTGACTTGTGCAATGTTAAGTGTGACACACAGGAGGTCTTTGATCGCCATCTCTCTGGTAAGAAGCACATTGCAAAGCTAAAACGATTTGAGGGTCACCAAGCTATGTATGGGCCAATGGGGCTTCAGGCTTTGTATCCTCCTAATCCAATTGCACAAACTCTTTTACATCCTCAAGGCCATCAACAACAAGGCTTCTACAGCCCTCCGGGCTCATTTCCTCCACAAGGCCCTTATATGCCTCCACAAGCTCACCAAGCAGCACCACCTGCTGCGGGTGCAGTTACTCAGTTTCAACAAAATGCCATTCCTCAGGGGTCTGAAGCCCATCCTGGATCTGGTAGCGAGGCAGTTGTCTCAGTGGTCCATGAACCTCAGCAGCAGTTTGCCAGAGTGGAATCTGGAAGGAAGGAGGAGTCTGTGACTGCGGAGATGAATCATGTGAATGGCATTTCAGAATCTGGAGGCAACGGGCCGAGTCCTGCAGTGGAGCAGGTATATGCTGCAACACATGAAGCTGCTCCACTCCCAGACCATGGAGTCACTGCTGATCATGTCGATGTGCCAGGACTGGACATACAACCAGAGGAAGGAGCAGCTGAGTAA 831 0.503 MVGEQKNDIVEQPEKPMEERPDSQVGKPRMEHFDNWRHGMKRRMRGGRGGKRMKMFEAPRRSIEPPKPKVVIPLICDLCNVKCDTQEVFDRHLSGKKHIAKLKRFEGHQAMYGPMGLQALYPPNPIAQTLLHPQGHQQQGFYSPPGSFPPQGPYMPPQAHQAAPPAAGAVTQFQQNAIPQGSEAHPGSGSEAVVSVVHEPQQQFARVESGRKEESVTAEMNHVNGISESGGNGPSPAVEQVYAATHEAAPLPDHGVTADHVDVPGLDIQPEEGAAE* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0619 276 Gene3D Classic Zinc Finger 50 104 - -
Vvi2g0619 276 MobiDBLite consensus disorder prediction 1 49 - -
Vvi2g0619 276 SUPERFAMILY beta-beta-alpha zinc fingers 66 105 IPR036236 -
Vvi2g0619 276 PANTHER OS06G0651300 PROTEIN-RELATED 23 204 - -
Vvi2g0619 276 SMART ZnF_U1_5 71 105 IPR003604 GO:0003676|GO:0008270
Vvi2g0619 276 MobiDBLite consensus disorder prediction 251 276 - -
Vvi2g0619 276 MobiDBLite consensus disorder prediction 8 40 - -
Vvi2g0619 276 Pfam Zinc-finger double-stranded RNA-binding 74 98 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0619 Vvi-Chr2 5390641 5391471 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0619 - - vvi:104882152 535.413