Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0609 ATGGCTTCCTCTTTCTTATTCCTCTTCATGACAATCTTTCTTACACACTATGTTTTTTCTTGTTCAGCCATCGTTCTGCTTCCTCTAACCCACTCTCTCTCTAAATCCCAATTCAACAGTACCCCCCACCTCCTCAAATTCACCTCCGCTCGCTCCGCCACCCGCTTCCACCACCGCCACCGCCAAATTTCTCTCCCACTCTCCCCCGGCAGTGACTACACTCTCTCATTCAACCTCGGCTCCCATCCACCCCAACCCATCTCCCTCTACATGGATACCGGCAGCGACCTTGTCTGGTTTCCCTGTGCCCCCTTCGAGTGTATCCTCTGCGAAGGCAAATATGACACCGCCGCCACCGGCGGCCTTTCCCCTCCCAATATCACCTCCTCAGCGTCGGTGTCCTGCAAGTCCCCTGCTTGCTCCGCAGCTCACACGTCGCTCTCGTCGTCTGACCTCTGTGCCATGGCTCGCTGTCCCTTGGAATTAATCGAGACCTCTGATTGTTCTTCCTTTTCTTGCCCACCTTTCTACTATGCCTACGGCGATGGAAGCCTGGTAGCACGCCTTTATCGCGATAGCTTGTCAATGCCAGCCTCGTCTCCTCTGGTTTTGCATAATTTCACTTTCGGCTGTGCTCACACCGCTCTCGGCGAGCCCGTCGGCGTGGCAGGGTTCGGCCGCGGCGTCCTTTCGCTACCAGCCCAACTCGCTAGTTTCTCTCCCCATCTCGGTAACCAATTCTCCTACTGTCTGGTTTCTCACTCGTTCGATGCCGACCGAGTTCGCCGGCCTAGTCCGCTCATCCTCGGGCGTTACTCCCTCGACGATGAAAAGAAGAAACGAGTTGGACATGACAGAGGAGAGTTCGTATACACAGCCATGCTTGATAACCCGAAGCACCCATACTTCTACTGCGTTGGACTCGAGGGAATCACCGTCGGCAATAGGAAAATCCCGGTACCGGAGATTCTAAAGAGGGTTGATAGAAGAGGTAACGGAGGGATGGTTGTTGACTCTGGCACCACGTTTACCATGCTGCCGGCGGGACTGTACGAATCGTTGGTGACAGAGTTCAATCACCGAATGGGCCGAGTCTACAAGCGAGCCACTCAGATTGAGGAGCGCACCGGACTCGGTCCGTGCTATTACTCAGACGACTCGGCTGCGAAAGTCCCTGCTGTAGCGTTGCATTTTGTTGGAAATTCCACTGTGATCTTACCCAGGAATAATTACTACTACGAATTCTTTGACGGTAGAGATGGACAGAAAAAGAAAAGGAAAGTGGGCTGTTTGATGCTTATGAACGGTGGAGATGAAGCGGAGTCAGGTGGACCCGCAGCGACCTTAGGGAACTATCAGCAACAGGGTTTCGAAGTGGTTTACGATTTGGAGAAGCACAGGGTCGGATTCGCCAGGAGGAAGATCAAGGATGATGAGACTGTGAGTGATGAATCCATCACCACATCGAGGACATGCAAAGATAGGATTCCTGAGTCCGGAAACCATGTCAGATTTAATAAAAGAAAAATGGAGAAGTTTTACTAA 1545 0.5243 MASSFLFLFMTIFLTHYVFSCSAIVLLPLTHSLSKSQFNSTPHLLKFTSARSATRFHHRHRQISLPLSPGSDYTLSFNLGSHPPQPISLYMDTGSDLVWFPCAPFECILCEGKYDTAATGGLSPPNITSSASVSCKSPACSAAHTSLSSSDLCAMARCPLELIETSDCSSFSCPPFYYAYGDGSLVARLYRDSLSMPASSPLVLHNFTFGCAHTALGEPVGVAGFGRGVLSLPAQLASFSPHLGNQFSYCLVSHSFDADRVRRPSPLILGRYSLDDEKKKRVGHDRGEFVYTAMLDNPKHPYFYCVGLEGITVGNRKIPVPEILKRVDRRGNGGMVVDSGTTFTMLPAGLYESLVTEFNHRMGRVYKRATQIEERTGLGPCYYSDDSAAKVPAVALHFVGNSTVILPRNNYYYEFFDGRDGQKKKRKVGCLMLMNGGDEAESGGPAATLGNYQQQGFEVVYDLEKHRVGFARRKIKDDETVSDESITTSRTCKDRIPESGNHVRFNKRKMEKFY* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0609 514 Pfam Xylanase inhibitor C-terminal 304 471 IPR032799 -
Vvi2g0609 514 SUPERFAMILY Acid proteases 69 474 IPR021109 -
Vvi2g0609 514 Gene3D Acid Proteases 60 270 IPR021109 -
Vvi2g0609 514 FunFam aspartic proteinase nepenthesin-1 279 480 - -
Vvi2g0609 514 ProSiteProfiles Peptidase family A1 domain profile. 73 471 IPR033121 -
Vvi2g0609 514 Pfam Xylanase inhibitor N-terminal 73 255 IPR032861 -
Vvi2g0609 514 FunFam Probable aspartyl protease At4g16563 63 269 - -
Vvi2g0609 514 CDD pepsin_A_like_plant 73 472 IPR034161 -
Vvi2g0609 514 PANTHER ASPARTYL PROTEASES 11 469 IPR001461 GO:0004190|GO:0006508
Vvi2g0609 514 Gene3D Acid Proteases 278 488 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0609 Vvi-Chr2 5273365 5278321 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0609 63 471 Miscellaneous Gene Families AT1G44130 21.749 9.80e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0609 - - vvi:100852959 976.467