Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0608 ATGTTCTTAATATCACATATGTATAAATCAAAGGAGAAAGTTAAGGATATAGTCATATCAAGAGTTGGAGAAGGTGATCCCTCCTCAGGTTTAGGGGAAGATCAATTCTCCACGCGGAGGACTAAATTAATCCATCCTCCCATTGAAACACACTGGAATTTCCCTTCTCGAGAAGAATACAAAAGGTCTTCAGTTTCAAAATTAAGCATGTTAGCTTACCCATTAAAGTTCCGGGAATCCCTGAAGAAATTTAAGAAGAGAAAAGATTTGAAAGCAATTCTTGAAGGAGTTCATGATCCAAAGGATGAGCAGCTGGTTGAATCTTTCCGTGAATTGCTTCCATGTGATGCTCAACTACAAGAGAAGCAAAATGATTATCATACCCTTTTACGATTTCTACGAATGAGGGATTTTGATATTTTAAAAGCAAAAACTATGTTCTTGAATTATCTTAAGTGGCGTGAGGAATTCAGGGTTGATACAATCTCTAAGGAATTTAAGTTTGAGGAATGCCCAGAAGTCAAGAAATGCTATCCTCATGGATTTCATGGAGTTGATAGGAAGGGTAGACCATTATACATTGAAAGGACTGGGCTAGTTGATCTTAATGCTCTCCTGCAACTAACTACTATTGAAAGATTTGTGAAGTATCATGTGTCTGAGCAAGAAAAAACATTGAAGTTGAGGTTTCCTGCATGTTCAGTTGCAGCTAAGAGGCATATAGCTTCTTCAACGAGTATAATAGATGTGAAAGGAGTTGGAGTTTCAAACTTCTCAAGGCCTGCAAGACATCTCTTTATGGAGATTCAAAAGATTGATAGCAATTATTACCCCGAGACTCTTAATCGACTTTTTATTGTGAATGCTGGATCTGGGTTTAGGGCCCTCTGGAAAGCAATCAAGGCATTTCTTGATGCGCGCACAATAGCAAAGATTGAGGTTCTAGGAAGCAACTACCAGAGCAACCTGGTTGAATTCATTGATCCTAGCAATTTGCCAAGTTTTCTCTGTGGAAACTGCACATGTTCTGGCTATGGGGGTTGCCTGTTTAGTGATAAAGGACCCTGGAATGATCCCGAAATTATAGAGATGCTTCAGGCAGCAGTTGAAAATGAAGATGAAAACAATGATGAAGAAGACGGTGATGAGGCTTCAGAAGAAATGGGAAAAAAACAAATTAGAGACTTCTACAATGCAGACGTAGAGCAATACAGTGAACAAAACTATATGGACAAGTCTGTGTTAGACAACATCAAGGAATTGGAGACTGCACTTCATGACACTAAACGAAAAATCCAAGCACTGGAAATGGCACTTGAGGACACCAAGATGGTGAGTCTCAAAATTCAACAAGTCACAAATTCTGAATGCTTCTCTTTACTAGCAATATTAATCCAATACTCTTTCTCATTGTAA 1416 0.3849 MFLISHMYKSKEKVKDIVISRVGEGDPSSGLGEDQFSTRRTKLIHPPIETHWNFPSREEYKRSSVSKLSMLAYPLKFRESLKKFKKRKDLKAILEGVHDPKDEQLVESFRELLPCDAQLQEKQNDYHTLLRFLRMRDFDILKAKTMFLNYLKWREEFRVDTISKEFKFEECPEVKKCYPHGFHGVDRKGRPLYIERTGLVDLNALLQLTTIERFVKYHVSEQEKTLKLRFPACSVAAKRHIASSTSIIDVKGVGVSNFSRPARHLFMEIQKIDSNYYPETLNRLFIVNAGSGFRALWKAIKAFLDARTIAKIEVLGSNYQSNLVEFIDPSNLPSFLCGNCTCSGYGGCLFSDKGPWNDPEIIEMLQAAVENEDENNDEEDGDEASEEMGKKQIRDFYNADVEQYSEQNYMDKSVLDNIKELETALHDTKRKIQALEMALEDTKMVSLKIQQVTNSECFSLLAILIQYSFSL* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0608 471 Gene3D - 158 370 IPR036865 -
Vvi2g0608 471 Coils Coil 418 445 - -
Vvi2g0608 471 SUPERFAMILY CRAL/TRIO domain 169 364 IPR036865 -
Vvi2g0608 471 SUPERFAMILY CRAL/TRIO N-terminal domain 98 165 IPR036273 -
Vvi2g0608 471 Gene3D - 76 157 - -
Vvi2g0608 471 Pfam CRAL/TRIO domain 178 336 IPR001251 -
Vvi2g0608 471 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 170 344 IPR001251 -
Vvi2g0608 471 SMART CRAL_TRIO_N_2 125 150 IPR011074 -
Vvi2g0608 471 Coils Coil 362 382 - -
Vvi2g0608 471 CDD SEC14 168 339 IPR001251 -
Vvi2g0608 471 SMART sec14_4 170 341 IPR001251 -
Vvi2g0608 471 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 64 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0608 Vvi-Chr2 5263011 5271236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0608 103 335 Acyl Lipid Metabolism Gene Families AT5G47730 28.512 4.37e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0608 - - vvi:100260753 872.848