Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0596 ATGGCAAAGAGTTACTTCAAGCAAGAGCATGATTTTGAGAAGAGACGTGCAGAGGCTGCTAGAATTAGGGAAAAATACCCAGACAGGATTCCGGTGATTGTCGAGAAGGCTGAGAGAAGTGATATTCCGAACATAGATAAGAAAAAGTACCTTGTCCCAGCCGACTTGACAGTAGGACAGTTTGTCTATGTAATACGTAAAAGGATCAAACTGAGTGCAGAGAAAGCTATTTTTATATTTGTGGACAATGTCCTCCCACCTACAGGGGCAATCATGTCCGGAATATATGATGAGAAGAAGGATGCAGATGGGTTTCTCTACGTCACTTACAGTGGAGAGAACACGTTTGGATATGAGATACCACATTAG 369 0.4228 MAKSYFKQEHDFEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSGIYDEKKDADGFLYVTYSGENTFGYEIPH* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0596 122 Gene3D - 1 118 - -
Vvi2g0596 122 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Vvi2g0596 122 CDD Ubl_ATG8 12 114 - -
Vvi2g0596 122 FunFam Autophagy-related protein 1 117 - -
Vvi2g0596 122 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Vvi2g0596 122 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 3 118 IPR004241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0596 Vvi-Chr2 5185326 5188563 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0596 K08341 - vvi:100260865 237.654