Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0589 ATGGCTTCGAAGGCTCTAGCAACCACCGCCCTTCTCCTTGCCCTAAACCTCCTCTTCTTCACTTTGGTCAGCTCCACCTCTGTCCCTTGCCCACCCGCACCAAAACCTAAAAACCACCACAAAAAGCCACCGGCCAAGGCTGTTTGCCCCAAGGACACCCTCAAGTTGGGTGTGTGTGCTGACTTGTTGAATGATTTGCTTCACGCTGTTGTTGGAACCCCACCAAAGAGCCCTTGCTGCAGCCTCATTGGGGGTCTGGCTGATCTTGAAGCCGCTGTCTGCCTTTGCACCGCCATTAAAGCTAATGTCTTGGGCATTAAACTAAATGTTCCAGTTTCACTTAGCTTGCTCTTGAACTACTGCGGCAAGAAGGTCCCAACCGGCTATCAATGCGCATAG 399 0.5213 MASKALATTALLLALNLLFFTLVSSTSVPCPPAPKPKNHHKKPPAKAVCPKDTLKLGVCADLLNDLLHAVVGTPPKSPCCSLIGGLADLEAAVCLCTAIKANVLGIKLNVPVSLSLLLNYCGKKVPTGYQCA* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0589 132 FunFam pEARLI1-like lipid transfer protein 1 47 132 - -
Vvi2g0589 132 SMART aai_6 49 131 IPR016140 -
Vvi2g0589 132 Pfam Hydrophobic seed protein 48 132 IPR027923 -
Vvi2g0589 132 CDD HPS_like 47 131 IPR027923 -
Vvi2g0589 132 Gene3D - 46 132 IPR036312 -
Vvi2g0589 132 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 52 131 IPR036312 -
Vvi2g0589 132 PANTHER - 8 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0589 Vvi-Chr2 5141876 5142274 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0589 1 131 Acyl Lipid Metabolism Gene Families AT4G22520 27.820 1.91e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0589 - - vvi:100267804 220.32