Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0587 ATGGCTTCCAAGAGCTCTGCATCATTGGCTTTCTTCCTTTTAGTTAACCTTCTCTTCTTTGCCATTGTCTCTGCATGTGGCACTTGCCCTAGTCCTCCTAAGTCAAAGACTAACCCCAGGCCAACTCCTAGCCCCAGTCCTGCTAGGGCCACTTGCCCTAAAGATACCCTTAAGTTGGGAGTATGTGTCGATTTGCTTGGCGGGCTGCTCGGAGTTGTTGTGGGTAACCCTCCAAAAACCCCATGCTGCTCTCTCATCCAAGGCCTTGCTGATCTTGAGGCTGCTGTTTGCCTTTGCACTGCCATTAAAGCCAATGTTTTGGGCATTAACCTCAATATCCCTCTTTCTCTTAGCTTGCTTCTCAATGTCTGCTCAAAGAAGGTCCCATCTGGCTTCCAGTGTGCCTAA 408 0.4926 MASKSSASLAFFLLVNLLFFAIVSACGTCPSPPKSKTNPRPTPSPSPARATCPKDTLKLGVCVDLLGGLLGVVVGNPPKTPCCSLIQGLADLEAAVCLCTAIKANVLGINLNIPLSLSLLLNVCSKKVPSGFQCA* 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0587 135 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 55 134 IPR036312 -
Vvi2g0587 135 MobiDBLite consensus disorder prediction 31 50 - -
Vvi2g0587 135 PANTHER - 6 134 - -
Vvi2g0587 135 Pfam Hydrophobic seed protein 51 135 IPR027923 -
Vvi2g0587 135 Gene3D - 48 135 IPR036312 -
Vvi2g0587 135 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vvi2g0587 135 FunFam pEARLI1-like lipid transfer protein 1 50 135 - -
Vvi2g0587 135 SMART aai_6 52 134 IPR016140 -
Vvi2g0587 135 MobiDBLite consensus disorder prediction 34 48 - -
Vvi2g0587 135 CDD HPS_like 50 134 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0587 Vvi-Chr2 5131036 5131443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0587 42 134 Acyl Lipid Metabolism Gene Families AT4G22490 31.183 2.68e-12 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0587 - - vvi:100257513 172.555