Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0585 ATGGATTCCAAGAGCACTTCATCAGCTGCTCTCTTCCTCTCCATCAACCTTGTCTTGTTTGCCCTTGTAAGTGGTTGCGACACTTGCCCTCAGCCCAAGTCAAAGCCAACCCCAACTCCCACTCCAGCCAACCCTAATTCGGGTAGCTGCCCCATAGATGCCCTAAAACTTGGTGTCTGCGCCAACGTGCTTAGTGGGCTAGTGGGGGTTGTGATTGGAACCCCTCCTGACACTCCTTGTTGCGCCTTGCTGGACGGCCTTCTCGATCTTGAAGCTGCCATTTGCCTTTGCACAGCCATTAAAGCTAACATTCTTGGCATCAACCTTGACATCCACCTTTCACTCAGCTTGCTGATCAACACTTGTGGGAAGACGCTTCCCAAAGATTTCCAATGTGCTTAA 402 0.51 MDSKSTSSAALFLSINLVLFALVSGCDTCPQPKSKPTPTPTPANPNSGSCPIDALKLGVCANVLSGLVGVVIGTPPDTPCCALLDGLLDLEAAICLCTAIKANILGINLDIHLSLSLLINTCGKTLPKDFQCA* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0585 133 Pfam Hydrophobic seed protein 50 133 IPR027923 -
Vvi2g0585 133 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 52 132 IPR036312 -
Vvi2g0585 133 PANTHER - 7 132 - -
Vvi2g0585 133 FunFam pEARLI1-like lipid transfer protein 1 48 133 - -
Vvi2g0585 133 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Vvi2g0585 133 Gene3D - 49 133 IPR036312 -
Vvi2g0585 133 SMART aai_6 50 132 IPR016140 -
Vvi2g0585 133 CDD HPS_like 48 132 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0585 Vvi-Chr2 5121253 5121654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0585 39 132 Acyl Lipid Metabolism Gene Families AT4G22490 40.426 4.25e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0585 - - vvi:100247265 236.884