Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0566 ATGAGCCCTCAGTTTGAATTTGAAAGGAATGACATCATGAGCAATGGCTTTTTGCTTTTTGTAGGTCCAATGTTCTATGGTGGATGGTATCACTTCTTCTACCAGTACAACCCAGATGCTGCAGTGTGGGGCAACATAGTGTGGGGCCATGCCGTGTCAAAGGACCTCATAGAGTGGCTTCATCTCCCTTTGGCCATGGTGGCTGATCAGTGGTATGACACCAATGGTGTGTGGACTGGCTCTGCAACCCTTCTCTCTGATGGGCAAGTGATCATGCTCTACACTGGTGCCACCAATGAGTCGGTGCAGGTCCAGAACCTGGCATACCCTGCTGACTTGTCTGATCCACTCCTTGTGGACTGGGTCAAGTACCCAGGTAACCCAGTGCTTGTTCCCCCACCAGGCATCGATGACAGGGACTTTCGTGACCCTACAACAGCCTGGTATTGGCCCGATGGAAAATGGAGGATTGCTATCGGCTCTAAAGTTAACAAAACTGGCATTTCTTTAGTTTATAATACTGAGGACTTCAAGAAGTATGAGCTCATAGAAGGGGTTCTTCATGCTGTCCCTGGCACCGGCATGTGGGAGTGTGTGGACCTCTACCCTGTATCATTGAAGGAAGATAATGGGTTGGACACTTCCTTTAATGGTCCCGGAGTCAAGCATGTGCTCAAGGCTAGCCTTGATGATGACAAGAATGATTACTATGCCATTGGGACTTATTCGCTGGAGTCAGGTAATTGGACTCCAGATAATTCCAATTTGGATGTTGGTATTGGCCTGAGGTATGATTATGGCAAGTTCTATGCTTCCAAGACGTTCTATGATCAAAACAAGCAGAGGAGAATATTGTGGGGTTGGATTGGAGAAACTGATGGCGAATCTGCTGATATCAAGAAGGGATGGGCATCTGTTCAGAGCATTCCAAGGACGGTGGTCTTCGACAAGAAGACTGGTACCAATATACTTCAGTGGCCAGTGGCGGAGATCAAGAGTTTGAGAAAGAGTAGCAAAAAATTTGACAAACTAGAGGTTGGACCAGGATCAGTTGTGACACTAGAAGTGGAAAAAGCCACACAGATGGACATTACTGCTGAGTTCGAGATTGATAAAGAGGCTTTGAAGAGAATAGGTGAAAGCGATGTGGAGTACAGCTGCGGCACAAGTGGTGGATCTGCTCAACGGGGTGAACTGGGACCATTTGGCCTTCTGCTCCTCGCCGACGAGGGCCGTTGTGAGCAGACTCCTGTGTATTTCTATGTTGCCAAAGGCACTGATGGCCAGCTCAAGACTTTCTTCTGTACTGATGAGTCAAGGTCTTCTCTAGCAAATGATGTCGATAAACGAATTTTTGGGAGCACAGTTCCAGTAATCAAAGGAGAAAAGTTATCCATGAGGATACTGGTGGATCATTCCATAATAGAAAGCTTTGCGCAAGGTGGAAGGACATGCATCACATCCCGGGTGTATCCAACCAAGGCGATCTATGGAGCAGCTCAGCTCTATGTCTTCAACAATGCTACCTCAGCCAGCATCACTGCCTCAATCCAGACATGGGCAATGAAGTCTGCATACATCCGCCCCTACTCATCCCATCAGGAGTCCTAA 1611 0.4761 MSPQFEFERNDIMSNGFLLFVGPMFYGGWYHFFYQYNPDAAVWGNIVWGHAVSKDLIEWLHLPLAMVADQWYDTNGVWTGSATLLSDGQVIMLYTGATNESVQVQNLAYPADLSDPLLVDWVKYPGNPVLVPPPGIDDRDFRDPTTAWYWPDGKWRIAIGSKVNKTGISLVYNTEDFKKYELIEGVLHAVPGTGMWECVDLYPVSLKEDNGLDTSFNGPGVKHVLKASLDDDKNDYYAIGTYSLESGNWTPDNSNLDVGIGLRYDYGKFYASKTFYDQNKQRRILWGWIGETDGESADIKKGWASVQSIPRTVVFDKKTGTNILQWPVAEIKSLRKSSKKFDKLEVGPGSVVTLEVEKATQMDITAEFEIDKEALKRIGESDVEYSCGTSGGSAQRGELGPFGLLLLADEGRCEQTPVYFYVAKGTDGQLKTFFCTDESRSSLANDVDKRIFGSTVPVIKGEKLSMRILVDHSIIESFAQGGRTCITSRVYPTKAIYGAAQLYVFNNATSASITASIQTWAMKSAYIRPYSSHQES* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0566 536 CDD GH32_Fruct1-like 22 313 - -
Vvi2g0566 536 Gene3D Glycosyl hydrolase domain; family 43 21 339 IPR023296 -
Vvi2g0566 536 Pfam Glycosyl hydrolases family 32 N-terminal domain 22 327 IPR013148 -
Vvi2g0566 536 SUPERFAMILY Arabinanase/levansucrase/invertase 22 328 IPR023296 -
Vvi2g0566 536 Pfam Glycosyl hydrolases family 32 C terminal 330 520 IPR013189 -
Vvi2g0566 536 SUPERFAMILY Concanavalin A-like lectins/glucanases 327 525 IPR013320 -
Vvi2g0566 536 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 339 522 - -
Vvi2g0566 536 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 16 339 - -
Vvi2g0566 536 Gene3D - 340 522 - -
Vvi2g0566 536 SMART glyco_32 22 482 IPR001362 GO:0004553|GO:0005975
Vvi2g0566 536 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 14 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0566 Vvi-Chr2 4882387 4884351 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0566 22 531 Glycoside Hydrolase AT1G12240 69.884 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0566 K01193 - vvi:100241232 1068.53