Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0563 ATGGCATTATCGAGTGTTTCCCCACTTTATATCTCAAAGTCTCCAAATCATCTACGATCTCTGTCCAAACCCTTCACCGTCGTCTGTAGGATTGAGCGCCAAAGGGAAAATAATTGGCGCGGGGAAGCGAATGCAGAGTCGAAGAAGTGGCAAAGACTGGTTTCAACCGCACTGGCTGCCGCAGTGGTTACCCTCAGCCCGGTGATGCCTGCTGTTGCGGATCTCAATAAGTATGAAGTCGAGACTCGGGGTGAATTTGGGATTGGATCAGCAGCCCAATTTGGTTCTGCAGATCTCAGGAAAGCAGTTCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCCGACATGAGGGAGTCTGATTTCAGTGGTTCAACATTTAATGGTGAATACCTTGAGAAAGCTGTTGCATACAAGGCGAGTTTAACAGACGCTCAGTCTTCCATCAATCCAACAGCTAGGCAATACAAATCCCAGGATGGGGAGGTTCTTCTTATTCTTCTTCTCCTTGCTGAATTGGAACTCAAGCTTCTTCCAGAGGATTTGAGCCCTCCAATCTCCTTTTCAAGGGCCGGATGCACCCCATGCCAGACCATATAA 606 0.4719 MALSSVSPLYISKSPNHLRSLSKPFTVVCRIERQRENNWRGEANAESKKWQRLVSTALAAAVVTLSPVMPAVADLNKYEVETRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGEYLEKAVAYKASLTDAQSSINPTARQYKSQDGEVLLILLLLAELELKLLPEDLSPPISFSRAGCTPCQTI* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0563 201 SUPERFAMILY Pentapeptide repeat-like 92 148 - -
Vvi2g0563 201 Pfam Pentapeptide repeats (8 copies) 92 131 IPR001646 -
Vvi2g0563 201 Gene3D - 79 158 - -
Vvi2g0563 201 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 45 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0563 Vvi-Chr2 4852239 4855611 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0563 - - vvi:104882043 278.87