Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0561 ATGGCATTATCAAGTGTCTCCCCACTTTATATCTCAAAGTCCCCAAATCATCTACAATCTCCGTCCAAACCCTTCACCGTCGTCTGCAGGATTGAGCTCCAAAGGGGAAATTATTGTCGCGCCAATGCAGAGTCGAAGAAGTGGCAAAGACTGGTTTCAACCGCATTGGCTGCCGCGGTTGTTACCCTTAGCCCGGTGATGCCTGCTGTCGCGGATCTCAATAAGTATGAAGCCGAGACGAGGGGTGAATTTGGGATTGGATCAGCAGCCCAATTTGGTTCTGCAGATCTCAGGAAAGCAGTTCATGTGAATGAAAATTTCAGAAGAGCCAATTTCACATCTGCCGACATGAGGGAGTCTGATTTCAGTGGTTCAACATTTAACGGCGCATACCTTGAGAAAGCTGTTGCATATAAGGCGAATTTTACAGGTGCGGATTTAAGCGACACATTGATGGACCGCATGGTTCTGAATGAAGCAAATCTCACAAATGCTGTGCTGGCTAGAACAGTGCTCACTCGCAGTGATCTTGGGGGTGCTGTTATTGAAGGTGCTGATTTCAGTGATGCTGTTATAGATCTTCCCCAGAAGCAGGCTCTCTGTAAGTATGCAAGTGGCACGAATCCTATTACTGGCGTGAGCACCAGAGCAAGCTTGGGCTGTGGGAACAGCCGACGGAGCGCCTATGGTTCACCATCTTCCCCTTTGTTAAGTGCTCCACCACCAAAACTGCTTGATCGGGATGGATTCTGTGATGAAGGCACTGGGCTCTGTGATGCAAAGTAA 786 0.4847 MALSSVSPLYISKSPNHLQSPSKPFTVVCRIELQRGNYCRANAESKKWQRLVSTALAAAVVTLSPVMPAVADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFTGADLSDTLMDRMVLNEANLTNAVLARTVLTRSDLGGAVIEGADFSDAVIDLPQKQALCKYASGTNPITGVSTRASLGCGNSRRSAYGSPSSPLLSAPPPKLLDRDGFCDEGTGLCDAK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0561 261 PANTHER THYLAKOID LUMENAL PROTEIN TL20.3, CHLOROPLASTIC 43 260 - -
Vvi2g0561 261 Gene3D - 86 229 - -
Vvi2g0561 261 MobiDBLite consensus disorder prediction 224 248 - -
Vvi2g0561 261 Pfam Pentapeptide repeats (8 copies) 157 189 IPR001646 -
Vvi2g0561 261 Pfam Pentapeptide repeats (8 copies) 90 129 IPR001646 -
Vvi2g0561 261 SUPERFAMILY Pentapeptide repeat-like 90 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0561 Vvi-Chr2 4846174 4851301 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0561 - - vvi:100250522 484.952