Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0556 ATGGCATATTTCTTCTTTACTCGAGATATTCTCACAGGGAAGCCAATTACGATCTTTGAAGGGCCAGATCATGGATCTGTTGCTAGAGATTTTACATACATTGATGATATAGTGAAGGGGTGTTTGGCATCATTGGATACCGCGAAGAAAAGTACAGGTACTGGTGGTAAGAAGAAGGGGGCGGCTCAATTTCGGATTTTCAATTTGGGGAACACGTCGCCGGTGGATGTGAGCAAGCTGGTGAGCATACTGGAGAAGCTTTTGAAGGTGAAAGCAAAAAGGAGGGTGTTGCCCATGCCCAGGAATGGAGATGTGCAGTATACACATGCGAATATAAGTTTGGCACAGAGGGAGCTCGGGTATAAGCCTACAACTGATCTTGAGTCAGGGCTGAAGAAATTTGTGCGGTGGTACATCACTTACCAGTCAAAATCGAAGAAAAAGAGCTCATGGGCATTACCGATTTGTATGAACAGAAAGCTAGAAGCATCCACATAG 498 0.4478 MAYFFFTRDILTGKPITIFEGPDHGSVARDFTYIDDIVKGCLASLDTAKKSTGTGGKKKGAAQFRIFNLGNTSPVDVSKLVSILEKLLKVKAKRRVLPMPRNGDVQYTHANISLAQRELGYKPTTDLESGLKKFVRWYITYQSKSKKKSSWALPICMNRKLEAST* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0556 165 Gene3D - 30 70 - -
Vvi2g0556 165 Gene3D - 8 138 - -
Vvi2g0556 165 PRINTS Nucleotide sugar epimerase signature 29 44 - -
Vvi2g0556 165 PRINTS Nucleotide sugar epimerase signature 104 121 - -
Vvi2g0556 165 PRINTS Nucleotide sugar epimerase signature 64 79 - -
Vvi2g0556 165 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 150 IPR036291 -
Vvi2g0556 165 PANTHER EPIMERASE-RELATED 1 143 - -
Vvi2g0556 165 Pfam GDP-mannose 4,6 dehydratase 25 133 IPR016040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0556 Vvi-Chr2 4802232 4802906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0556 1 150 Miscellaneous Gene Families AT4G00110 76.000 7.48e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0556 K08679 - vvi:100854222 286.574