Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0552 ATGGGCAAAGATCTGAGCGATGACCAGGTGGCCTCCATGAAAGAAGCCTTCACCCTCTTCGACACCGATGGGGACGGCCGGATCGCCCCGTCGGAGCTTGGAATCCTAATGCGCTCTCTCGGCGGCAACCCTACCCAAGCCAAGCTCAAGGAGATCGTAGCCCAAGAAAACCTCACCACCCCCTTCGATTTCCCCAGATTCCTCGACCTCATGTCCAAGCACATGAAGCCCGAGCCCTTCGATCGCCAGCTCCGCGATGCCTTCAAGGTCCTCGATAAGGAGTCCACCGGCTTCGTCTCCGTCGCCGATCTCCGCCACATTCTCACCAGCATTGGCGAGAAGCTCGAGCCGGCTGAGTTCGACGAGTGGATCCGGGAAGTCGATGTCGGGTCCGATGGGAAGATCCGTTACGAGGATTTCATCTCTCGGATGGTGGCCAAGTGA 444 0.5878 MGKDLSDDQVASMKEAFTLFDTDGDGRIAPSELGILMRSLGGNPTQAKLKEIVAQENLTTPFDFPRFLDLMSKHMKPEPFDRQLRDAFKVLDKESTGFVSVADLRHILTSIGEKLEPAEFDEWIREVDVGSDGKIRYEDFISRMVAK* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0552 147 FunFam probable calcium-binding protein CML13 3 80 - -
Vvi2g0552 147 ProSiteProfiles EF-hand calcium-binding domain profile. 115 147 IPR002048 GO:0005509
Vvi2g0552 147 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Vvi2g0552 147 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Vvi2g0552 147 SUPERFAMILY EF-hand 5 144 IPR011992 -
Vvi2g0552 147 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Vvi2g0552 147 Gene3D - 81 145 - -
Vvi2g0552 147 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Vvi2g0552 147 FunFam Myosin light chain 1 81 145 - -
Vvi2g0552 147 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Vvi2g0552 147 PANTHER MYOSIN LIGHT CHAIN 1, 3 4 145 - -
Vvi2g0552 147 Gene3D - 3 80 - -
Vvi2g0552 147 SMART efh_1 12 40 IPR002048 GO:0005509
Vvi2g0552 147 SMART efh_1 83 111 IPR002048 GO:0005509
Vvi2g0552 147 SMART efh_1 119 147 IPR002048 GO:0005509
Vvi2g0552 147 CDD EFh 83 144 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0552 Vvi-Chr2 4762059 4762502 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0552 1 147 EF-hand Containing Proteins AT1G12310 87.162 2.23e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0552 K13448 - vvi:100232874 294.278