Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0539 ATGGGTGGGATTTCCATTCATGGTCAGGTTCAGAAATTCGGGTTTAGTTGTGGTGGTGATGGGATTTATGTGGAGACTGCTCTGGTGGATTTTTACTGCAAACTGGGTGATATGGAGATTGCACGGAAGATGTTTGATGAAATGGCTGAGAGGAATGTGGTTTCGTGGAATTCGATGTTAGCTGGGTATCTGAAGTCCGGGGATTTAGTGGTGGCCCAGAGGGTGTTTGATGAGATTCCGCAGAAAGATGTTATTTCGTGGAATTCAATGATTTCGGGATATGCCAGAGCAGGGGATATGGAAAAGGCGTCATCGTTGTTTCAACAAATGCCCGAGAGGAATTTCGCTTCTTGGAATGCGATGATTAGTGGGCATGTGGAGTTTGGGGACATAGATTCTGCAAGAAGCTTTTTTGATGCAATGCCGCAGAAAAATAATGTTTCTTGGATGACTATGATTTCTGGGTACTCAAAATGTGGGGATGTTGATTCTGCATGCGAACTATTTGATCAGGTCGGTGGGAAAGATCTGCTCTTATTTAATGCCATGATAGCTTGCTATGCTCAAAATAGTAGACCGAATGAAGCTCTTAATCTATTTAACAATATGCTTAATCCATATGTAAATGTTCAACCAGATGAGATGACTTTGGCTAGTGTTATATCTGCATGTTCTCAGTTAGGAGACTTGAGATTTGGGCCTTGGATTGAGTCATATATGAGAAGACTTGGAATTGAAATGGATGGTCATTTGGCCACTGCTTTACTTGACTTGTATGCAAAGTGTGGAAGCATTGATAAGGCATATGAATTGTTCCATGGTTTGAGAAAGAAGGATTTAGTTGCTTATACTGCAATGATCTTGGGGTGTGGCATAAATGGTAAAGCTATTGATGCAATCAAGTTGTTTGATGAGATGGTAGATGCCCAGATTTTCCCAAATTCAATCACCTTCATTGGGCTATTAACTGCCTATAACCATGCTGGTTTGGTTGAAGAAGGCTACCGTTGCTTTACCTCCATGAAAAAGTATAATCTTGTTCCTTCGGTTGATCATTATGGAATCATGGTTGATCTTTTTGGTAGGGCAGGAAGGCTACAAGAAGCACTTGAGCTGATAAAGAGTATGCCCATGCAGCCTCATGCTGGGGTTTGGGGAGCTTTGCTTCTTGCTTGTAGGTTGCATAATAATGTTGAGTTTGGGGAGATTGCAGCTCAGCATTGCTTCGAATTGGAGCCTGATACAACTGGTTATCGTTCTCTTCTTTCCAATATTTACGCATCTGGTGAGAGGTGGGATGATGTCAAGAGATTGAGAAAGGTCACGAAGGAGAAGGGATTTTCCAAAATACCTGGTTGCAGTTGGATGGAATCTGCTTGA 1380 0.4196 MGGISIHGQVQKFGFSCGGDGIYVETALVDFYCKLGDMEIARKMFDEMAERNVVSWNSMLAGYLKSGDLVVAQRVFDEIPQKDVISWNSMISGYARAGDMEKASSLFQQMPERNFASWNAMISGHVEFGDIDSARSFFDAMPQKNNVSWMTMISGYSKCGDVDSACELFDQVGGKDLLLFNAMIACYAQNSRPNEALNLFNNMLNPYVNVQPDEMTLASVISACSQLGDLRFGPWIESYMRRLGIEMDGHLATALLDLYAKCGSIDKAYELFHGLRKKDLVAYTAMILGCGINGKAIDAIKLFDEMVDAQIFPNSITFIGLLTAYNHAGLVEEGYRCFTSMKKYNLVPSVDHYGIMVDLFGRAGRLQEALELIKSMPMQPHAGVWGALLLACRLHNNVEFGEIAAQHCFELEPDTTGYRSLLSNIYASGERWDDVKRLRKVTKEKGFSKIPGCSWMESA* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0539 459 Pfam E motif 395 457 IPR046848 -
Vvi2g0539 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 52 82 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat 26 53 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat 85 115 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat 352 377 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat 117 145 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat 54 83 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat 147 171 IPR002885 -
Vvi2g0539 459 FunFam Pentatricopeptide repeat-containing protein At4g22760 253 459 - -
Vvi2g0539 459 FunFam Pentatricopeptide repeat-containing protein isoform A 83 175 - -
Vvi2g0539 459 Gene3D Tetratricopeptide repeat domain 332 456 IPR011990 GO:0005515
Vvi2g0539 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Vvi2g0539 459 SUPERFAMILY TPR-like 19 171 IPR011990 GO:0005515
Vvi2g0539 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 83 117 IPR002885 -
Vvi2g0539 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 180 204 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 85 115 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 26 54 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 117 146 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 147 171 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 317 350 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 253 281 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 281 314 IPR002885 -
Vvi2g0539 459 NCBIfam pentatricopeptide repeat 353 376 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat family 278 325 IPR002885 -
Vvi2g0539 459 Pfam PPR repeat family 177 224 IPR002885 -
Vvi2g0539 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Vvi2g0539 459 Gene3D Tetratricopeptide repeat domain 82 176 IPR011990 GO:0005515
Vvi2g0539 459 Gene3D Tetratricopeptide repeat domain 180 331 IPR011990 GO:0005515
Vvi2g0539 459 Gene3D Tetratricopeptide repeat domain 21 81 IPR011990 GO:0005515
Vvi2g0539 459 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 68 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0539 Vvi-Chr2 4666524 4667903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0539 59 457 Glycoside Hydrolase AT3G49170 31.220 1.68e-67 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0539 - - vvi:100260606 938.332