Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0535 ATGGCAGTGCATCTTCACTCCACGCCCTCTTCTTCTTCATCTCTACACTCCCGAACCAGAGTCTCTCAGCCGCCTCTTAGTTGCGCGACCAAGCTCTTTTCAGGATTGAAGCTTCAATCTGCAAGTACGTTTGGTACTGGAAAGCCGAACTTGACAGTTGAATTCTTCAACAAAGTTCATAAGAGCGTCCAATCCAGGACTAGTGACAGTAAATCGACACGAGCACGTGTTCGAATGATGCCTATAGGGACCCCAAGAGTGCCCTATAGAACTCCTGGTGAGGGAACTTGGCAATGGGTTGATTTGTGGAATGCCCTGTACCGGGAACGAGTTATCTACATTGGACAACATATAGATGAAGAATTTAGCAACCAACTATTAGCCACGATGTTGTACCTTGACAGCATTGAATCTTCCAAAAGGATGTTTTTTTATATTAACAGTCCTGGTGGAGATCTTACTCCAAGCTTGGCTATATATGATACCATGCAAAGCTTGAAAAGTCCTGTTGGCACCAATTGTTTGGGTTTTGCATATAACCTAGCTACCTTTCTTCTAGCAGCTGGAGAAAAGGGTAATCGCTTGGCAATGCCTCTTTCAAGGATTGCACTACAATCACCAGCTGGAGCTGCTCGTGGTCAGGCTGATGACATTCGTAATGAAGCAAATGAGCTTCTTAGAATCAGAGATTACCTTTTTTCAGAGTTGGCCAATAAGACGGGCCAGCCCATCGATAAGATTAACAAGGATTTAAGGCGGATGAAACGCTTCAATGCCCAGGAGGCTCTTGAATATGGGCTCATTGATCGTATATTAAGGCCACCCCGAGTTAAAGCTGATGCACCACGCAAAGATGCTGGAACTGGTCTCGGTTAG 876 0.4521 MAVHLHSTPSSSSSLHSRTRVSQPPLSCATKLFSGLKLQSASTFGTGKPNLTVEFFNKVHKSVQSRTSDSKSTRARVRMMPIGTPRVPYRTPGEGTWQWVDLWNALYRERVIYIGQHIDEEFSNQLLATMLYLDSIESSKRMFFYINSPGGDLTPSLAIYDTMQSLKSPVGTNCLGFAYNLATFLLAAGEKGNRLAMPLSRIALQSPAGAARGQADDIRNEANELLRIRDYLFSELANKTGQPIDKINKDLRRMKRFNAQEALEYGLIDRILRPPRVKADAPRKDAGTGLG* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0535 291 PRINTS Clp protease catalytic subunit P signature 101 116 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 PRINTS Clp protease catalytic subunit P signature 141 161 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 PRINTS Clp protease catalytic subunit P signature 172 189 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 PRINTS Clp protease catalytic subunit P signature 193 212 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 PRINTS Clp protease catalytic subunit P signature 250 269 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 MobiDBLite consensus disorder prediction 1 21 - -
Vvi2g0535 291 Gene3D - 84 279 - -
Vvi2g0535 291 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 64 275 IPR023562 -
Vvi2g0535 291 Pfam Clp protease 98 273 IPR023562 -
Vvi2g0535 291 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 83 275 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 SUPERFAMILY ClpP/crotonase 94 276 IPR029045 -
Vvi2g0535 291 CDD S14_ClpP_2 101 271 IPR001907 GO:0004176|GO:0004252|GO:0006508
Vvi2g0535 291 FunFam ATP-dependent Clp protease proteolytic subunit 83 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0535 Vvi-Chr2 4625388 4628451 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0535 K01358 - vvi:100256891 569.696