Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0533 ATGGCAGAATTGATGGAGTGGCCGTGTTTGGATGAATACGAAAAGCTTGTCATCCGTATGAACACTCCCAGGGTCGTGGTTGATAATGCGGTTTGCGCCACGACGACTCTGGTCAAGGTGGATAGCGCTAGAAAACACGGAATACTTTTGGAAGCCGTACAGGTTCTCACGGATCTGAACCTCTCTATAAAGAAAGCTTACATCTCCTCTGATGGAAGATGGTTCATGGACGTTTTCCATGTAACTGATCTAAACGGAAACAAACTGACGGATGAGAGCGTTATCAACTACATTGAACAGTCTCTTGGTTGCATTCATCATGTAAGATCCAACAGTTTTAATGGTCTGACGGCATTGGAGCTAACAGGGACTGATCGCCTTGGTCTTTTATCAGAGGTGTTTGCAGTACTGGCAGACCTGGAATGTAATGTGGTAGAGTCCAAAATGTGGACTCACAATGGAAGAATTGCTTCTCTCATTTATGTGAAGGACTGCGATTCAGGGAACCCGATAGAGGACTCTCAAAAGATTGATAGAATTGAAGGACGGTTAAGGAATGTTCTGAAGGGAGATAATGATATTCGAAGCGCAAAAACTTCGGTTTCCCTTGCTGTCACTCACACTGAGAGAAGACTGCATCAAATGATGTTTGCAGACCGTGATTATGAACGAGAGCCTATAATAAGGTCTGCTTCTGAATCACCGGCTGTCACTGTCCAGAATTGGGTGGAAAGGGGTTATTCTGTTGTGAATGTTCAGTGCAAGGATCGAAGGAAGCTTCTGTTTGATGTTGTTTGTACATTGACAGACATGCAGTATGTTGTTTTTCATGCAACCATTAACACCGCAGGGGATAAAGCATATTTGGAGTTCTATATCAGACACACTGATGGATCCCCGATTAGTTCAGAGGCTGAGAGGCAACGTGTGATTCAATGCTTGCAAGCTGCCATTGAAAGAAGGGCTTCTGAGGGTGTGAGGCTAGAATTATGCACAGAGGATCGGAGGGGGCTTTTAGCTGATGTGACCCGAACATTCCGAGAGAATGGTCTTAATGTGACCAGAGCTGAGATATCCACAACTTCCGAGATTGCTCTGAATGTTTTCTACGTAACGGATGCAATGGGAAACCCAGCAGATCCAAAGATCATCGAGGCTGTAAGACAGAAAATTGGATTGAGTAATTTAAAAGTGAAGGAACTGCCATTGATCAATCATCAAGAAGCAGAAAGGGATGAGCCAACAGTTGGGGTTGGTGGGGCCGTGCTGTTATCCCTTGGGAGCCTAGTTAGAAGGAATCTGTACAATTTGGGATTGATTAGATCACATTCTTAG 1335 0.4442 MAELMEWPCLDEYEKLVIRMNTPRVVVDNAVCATTTLVKVDSARKHGILLEAVQVLTDLNLSIKKAYISSDGRWFMDVFHVTDLNGNKLTDESVINYIEQSLGCIHHVRSNSFNGLTALELTGTDRLGLLSEVFAVLADLECNVVESKMWTHNGRIASLIYVKDCDSGNPIEDSQKIDRIEGRLRNVLKGDNDIRSAKTSVSLAVTHTERRLHQMMFADRDYEREPIIRSASESPAVTVQNWVERGYSVVNVQCKDRRKLLFDVVCTLTDMQYVVFHATINTAGDKAYLEFYIRHTDGSPISSEAERQRVIQCLQAAIERRASEGVRLELCTEDRRGLLADVTRTFRENGLNVTRAEISTTSEIALNVFYVTDAMGNPADPKIIEAVRQKIGLSNLKVKELPLINHQEAERDEPTVGVGGAVLLSLGSLVRRNLYNLGLIRSHS* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0533 444 CDD ACT_ACR_4 325 396 - -
Vvi2g0533 444 SUPERFAMILY ACT-like 323 396 IPR045865 -
Vvi2g0533 444 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 5 400 IPR040217 -
Vvi2g0533 444 Pfam ACT domain 121 160 - -
Vvi2g0533 444 ProSiteProfiles ACT domain profile. 37 113 IPR002912 -
Vvi2g0533 444 SUPERFAMILY ACT-like 246 298 IPR045865 -
Vvi2g0533 444 CDD ACT_ACR_1 35 103 - -
Vvi2g0533 444 SUPERFAMILY ACT-like 114 189 IPR045865 -
Vvi2g0533 444 SUPERFAMILY ACT-like 34 107 IPR045865 -
Vvi2g0533 444 ProSiteProfiles ACT domain profile. 118 195 IPR002912 -
Vvi2g0533 444 Gene3D - 325 392 - -
Vvi2g0533 444 Gene3D - 116 192 - -
Vvi2g0533 444 ProSiteProfiles ACT domain profile. 327 406 IPR002912 -
Vvi2g0533 444 CDD ACT_ACR_3 247 321 - -
Vvi2g0533 444 CDD ACT_ACR_2 117 190 - -
Vvi2g0533 444 Pfam ACT domain 328 389 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0533 Vvi-Chr2 4597956 4600472 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0533 - - vvi:100242743 860.907