Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0532 ATGCTATCCGAGCTGAGGAAGCAGAGAGGAATTGTGGTTCCCCTCATGGTCATGAACTTGGCTTGGCTGGGCAAGTGTGTCATCACTACTGTGTTTCTGGGCCAGCTTGGAGAGCTGCAGTTGGCCGGTGGTGTGCTCGGGTTCACCTTTGCAAATGTGACTGGCTACTCTGTGTTGAATGGGCTCTGTTGTGCCATGGAACCTATATGTGGTCAGGCTTGTGGGGCTAAAAATGTTAGGCTTCTACACAAGACCCTTGTCATGGTAACCATCTTATTGCTGACTACTGCAGTGCCTATATCCTTCTTGTGGCTCAACGTTGACAAGATCCTCATTTATTTTGGCCAACAAGAAGATATTTCTATGGTTGCCAAGACCTATCTCTTGTATCTCCTGCCCGATTTGTTCGTCATTTCATTGCTTTGTCCTCTTAAAACCTACTTGAGCGCACAAAGCATGGTCTTTCCTATAATGTTCAGCACGTCTGTTGCACTGGCTTTTCATGTACCTATCAATATCTTACTCTCCAGAGCCAAGGGTCTGAAGGGAGTTTCCATGGCAGGCTGGGTAACTGATCTCCTTATTGTGATCCTGCTTGCATTTTATGTGTTGAGGATAGAGAGTAGCAAGGAAAGAAGATGGAAGGAAGGAGGGTGGTGGGATCAAGGAGTAGGCGACTGGATCAAAATGCTAAAACTATGTGGTCCAAGTTGCCTCACCACCTGCCTTGAGTGGTGGTGCTATGAGATTTTGGTGTTGCTCGCGGGGCGGCTCCCGAATGCCAAGCAGGCAGTGGGGGAGTTAGCCATAGTGCTAAACTTTGATTACCTGCTCTACTCTGTCATGCAATCGCTTGCTACATGTGCATCCACCCGTGTCTCGAATGAACTTGGCGCAAACCAACCAGACCTTGCTTATCAGTCAGCATATATTTCCTTTCTGGTGAGCTTCGCCTTGGGTTGCATAGGTGCTGCAATGATGGTCTCTGCCAGAGGTATTTGGGGGTATTTATATAGCCACGATGCAAGGACTATCAGAGGTGTAAAGAAGATGCTGCCGCTAATGGCTCCGGTGGAGGTGGTGAACTTCCCTTTAGCAGTTTGTGGAGGAATAGTCCGGGGAACAGCTAGGATGTCGTTGGCAATGTATGCCAATCTTGGTGGGTTCTACTTGGTGGCCCTGCCCTTGGGCGTGGTTTTCGCTTTCAAGGCAGGGCTTGGACTTGGGGGACTACTAATAGGGCTCTTGGTCGGTGTGGTTGTGTGCTTGGCTTTGTTGTTGGTGTTCATTTTTAGGATTGATTGGGCTGAAGCAGCTGGCAAGGCACAAATACTTGCCTGTAGGGAACAGGAAATTGCCAAGGAAGATGAAAATCACAGAATTTTGAAGACCCTCGAAAATCCATGA 1407 0.4833 MLSELRKQRGIVVPLMVMNLAWLGKCVITTVFLGQLGELQLAGGVLGFTFANVTGYSVLNGLCCAMEPICGQACGAKNVRLLHKTLVMVTILLLTTAVPISFLWLNVDKILIYFGQQEDISMVAKTYLLYLLPDLFVISLLCPLKTYLSAQSMVFPIMFSTSVALAFHVPINILLSRAKGLKGVSMAGWVTDLLIVILLAFYVLRIESSKERRWKEGGWWDQGVGDWIKMLKLCGPSCLTTCLEWWCYEILVLLAGRLPNAKQAVGELAIVLNFDYLLYSVMQSLATCASTRVSNELGANQPDLAYQSAYISFLVSFALGCIGAAMMVSARGIWGYLYSHDARTIRGVKKMLPLMAPVEVVNFPLAVCGGIVRGTARMSLAMYANLGGFYLVALPLGVVFAFKAGLGLGGLLIGLLVGVVVCLALLLVFIFRIDWAEAAGKAQILACREQEIAKEDENHRILKTLENP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0532 468 NCBIfam MATE family efflux transporter 26 411 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g0532 468 CDD MATE_eukaryotic 4 404 IPR045069 GO:0042910|GO:1990961
Vvi2g0532 468 PANTHER MULTIDRUG RESISTANCE PROTEIN 3 435 - -
Vvi2g0532 468 Pfam MatE 14 173 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g0532 468 Pfam MatE 236 398 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0532 Vvi-Chr2 4578077 4579483 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0532 K03327 - vvi:100251249 878.626