Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0502 ATGCTCGTAAGGGCAGTCGCGACGGTCACAACCGCGGTAGCAGTCACTGCTCTGCCAGTTGCGTATGCCTACGCATCATTCTCTCCATCTTCCTCTTCTTCATCGTCTTCGTCTCAGGTCTCCAAGACCCTAAATCTGTCGTTCCTCTCTCAACCGCATCGCCCACGCCTTGTCGGAACTGCTACTCACCCTCCCTCCGCCCTCCGGATGGACGCTTCTTCGACCAACCACACTTCCTCCTCCCAGAACGATGTCGTTTTGCCGGAGCTCCTGACAGAGTTTATGGTGGATATGAAGTGTGAAGGCTGTGTTAATGCCGTAAAGAATAAGTTGCAAACCATCAGTGGAGTTAAGAATGTTGAGGTTGACTTGAGCAATCAAGTAGTCAGGGTTCTCGGTTCTTCACCTGTGAAGACCATGGCTGATGCTTTGGAACAGACTGGACGAAATGCCCGATTAATTGGCCAAGGGATCCCTGAAGATTTTTTGGTTTCTGCTGCTGTTGCTGAATTCAAAGGTCCAGATATTTTCGGTGTGGTTCGCTTGGCTCAAGTGAATATGGAATTGGCTAGGATTGAAGCCAGCTTTAGTGGGTTGTCTTCAGGGAAACATGGGTGGTCTATAAATGAATTTGGTGATCTCACAAGAGGTGCAGCAAGCACTGGTAAAGTGTTCAATCCAACAAACAAAGGAACGGATGAGGAGCCTCTTGGTGACCTGGGAACACTGGATGTGGATGAGAATGGTGAAGCCTTCTTCTTGGGTGTCAAGCAGAACCTGCGGGTTGGTGTTCTAATTGGACGGGCTGTAGTGGTATATGGAACTGAAGATAAATCAAATCCAGGTGTTGCAGCTGCAGTGATTGCTAGAAGTGCTGGGGTTGGTGAGAACTACAAAAAGATTTGCCTGTGTGATGGAACCACCATATGGGAATCAACTAACTCAGATTTTGTCGCCAGCAAGGTTTGA 969 0.485 MLVRAVATVTTAVAVTALPVAYAYASFSPSSSSSSSSSQVSKTLNLSFLSQPHRPRLVGTATHPPSALRMDASSTNHTSSSQNDVVLPELLTEFMVDMKCEGCVNAVKNKLQTISGVKNVEVDLSNQVVRVLGSSPVKTMADALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRLAQVNMELARIEASFSGLSSGKHGWSINEFGDLTRGAASTGKVFNPTNKGTDEEPLGDLGTLDVDENGEAFFLGVKQNLRVGVLIGRAVVVYGTEDKSNPGVAAAVIARSAGVGENYKKICLCDGTTIWESTNSDFVASKV* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0502 322 FunFam Copper chaperone for superoxide dismutase 82 159 - -
Vvi2g0502 322 FunFam Copper chaperone for superoxide dismutase 163 290 - -
Vvi2g0502 322 MobiDBLite consensus disorder prediction 54 81 - -
Vvi2g0502 322 Pfam Heavy-metal-associated domain 94 149 IPR006121 GO:0046872
Vvi2g0502 322 SUPERFAMILY HMA, heavy metal-associated domain 91 154 IPR036163 GO:0046872
Vvi2g0502 322 ProSiteProfiles Heavy-metal-associated domain profile. 89 152 IPR006121 GO:0046872
Vvi2g0502 322 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 86 316 IPR024134 GO:0005507
Vvi2g0502 322 MobiDBLite consensus disorder prediction 67 81 - -
Vvi2g0502 322 Gene3D Superoxide dismutase, copper/zinc binding domain 160 290 IPR036423 GO:0006801|GO:0046872
Vvi2g0502 322 SUPERFAMILY Cu,Zn superoxide dismutase-like 154 314 IPR036423 GO:0006801|GO:0046872
Vvi2g0502 322 CDD HMA 93 152 IPR006121 GO:0046872
Vvi2g0502 322 Pfam Copper/zinc superoxide dismutase (SODC) 178 279 IPR001424 GO:0006801|GO:0046872
Vvi2g0502 322 Gene3D - 79 159 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0502 K04569 - vvi:100263358 588.186