Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0488 ATGGATGATCCCACAACACCTTCAACAACCAACCAATCAGCTCTCAGAAGCTCCTCAGGGTTAAATCTACCTTCTACAATGTCGAAGACCCCTCTATCTCTCGAACCCGTAACCCCGTCGACCCACATTGAGCGTATGATCAGTGTAGGGTATCAGCCGTCGCCGTCGAGAACGATTTACAGCGATAGATTCATCCCCAGCAGAACAGGTTCCAATTTTGCGCTCTTCGACATCTCCCCGTTGGCTAACTCGCCGGCGGAGGGGCGAGAGGATGGCTCTGGCGCGTATGCGACGTTGTTGAGGACGGCCCTATTCGGGCCCGATGCCGGAGTCTGTTCCCCAGGCACGCCGGATAAGTTGATGAGATTGGATGGGAAGAATTCTTCTGTGTATCCGTCGAGCCGGAATATTTTTCGGTACAAGACGGAGACTCGGCAGTCGATGCACTCGCTGTCGCCTTTCGGGTTTGAAGATGCATTGCCGGGCGTGAGTCATGGCCCGGTCAAGGCAGCACGGAAGGTTCCTCGATCGCCTTATAAGGTTTTGGATGCTCCGGCATTACAAGATGATTTTTATCTGAATCTCGTTGATTGGTCCGCGCATAATGTGTTGGCAGTTGGGTTGGGCAATTGTGTCTATTTATGGAATGCTTGTAGTAGCAAGGTGACAAAGTTGTGTGACCTGGGAATGGATGTAAGTGTCTGTTCAGTAGGCTGGGCGCAGCGTGGCACACATCTTGCTGTTGGAACAAGTAATGGAAAACTCCAGATTTGGGATGCATCTCGCTGCAAGAGAGTGCGAACTATGGAGGGTCATCGGTTACGTATTGGAGCTCTAGCCTGGAGCTCATCCATGTTGTCTTCAGGTAGTCGGGATAAAACAATTCTTCAACGTGATATACGTGCTCAGGATGATTTTGTTAATAAGCTCGCTGGACACAAGTCAGAGGTTTGTGGATTGAAGTGGTCTTATGATAACCGTGAGTTAGCATCAGGAGGAAATGATAATAGACTTTTTGTTTGGAATCAACATTCAACTCAACCTGTCCTAAAATACTGTGAGCATACAGCAGCTGTAAAAGCCATAGCATGGTCCCCCCATCTTCATGGTCTTCTTGCATCTGGGGGTGGTACAGCAGACCGCTGCATTCGATTCTGGAATACAACCACTAACTCACACCTGAGCTGCATGGACACCGGCAGTCAGGTATGCAACCTTGTCTGGTCTAAAAATGTCAATGAACTTGTAAGCACCCATGGGTACTCCCAGAATCAAATAATAGTTTGGAGATATCCTACCATGTCAAAGGTATGA 1314 0.4886 MDDPTTPSTTNQSALRSSSGLNLPSTMSKTPLSLEPVTPSTHIERMISVGYQPSPSRTIYSDRFIPSRTGSNFALFDISPLANSPAEGREDGSGAYATLLRTALFGPDAGVCSPGTPDKLMRLDGKNSSVYPSSRNIFRYKTETRQSMHSLSPFGFEDALPGVSHGPVKAARKVPRSPYKVLDAPALQDDFYLNLVDWSAHNVLAVGLGNCVYLWNACSSKVTKLCDLGMDVSVCSVGWAQRGTHLAVGTSNGKLQIWDASRCKRVRTMEGHRLRIGALAWSSSMLSSGSRDKTILQRDIRAQDDFVNKLAGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQVCNLVWSKNVNELVSTHGYSQNQIIVWRYPTMSKV* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0488 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 342 - -
Vvi2g0488 437 MobiDBLite consensus disorder prediction 1 37 - -
Vvi2g0488 437 Gene3D - 135 437 IPR015943 GO:0005515
Vvi2g0488 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 351 IPR001680 GO:0005515
Vvi2g0488 437 SMART WD40_4 219 259 IPR001680 GO:0005515
Vvi2g0488 437 SMART WD40_4 262 299 IPR001680 GO:0005515
Vvi2g0488 437 SMART WD40_4 175 216 IPR001680 GO:0005515
Vvi2g0488 437 SMART WD40_4 345 387 IPR001680 GO:0005515
Vvi2g0488 437 SMART WD40_4 303 342 IPR001680 GO:0005515
Vvi2g0488 437 Pfam WD domain, G-beta repeat 308 342 IPR001680 GO:0005515
Vvi2g0488 437 Pfam WD domain, G-beta repeat 347 387 IPR001680 GO:0005515
Vvi2g0488 437 SUPERFAMILY WD40 repeat-like 187 437 IPR036322 GO:0005515
Vvi2g0488 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Vvi2g0488 437 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 35 437 IPR033010 GO:0010997|GO:0097027|GO:1904668
Vvi2g0488 437 Pfam Anaphase-promoting complex subunit 4 WD40 domain 227 283 IPR024977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0488 Vvi-Chr2 4235953 4244122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0488 246 390 Miscellaneous Gene Families AT5G08390 29.932 6.65e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0488 K03364 - vvi:100256403 895.575