Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0479 ATGACGAAAAATGTGGGAATTCTCGCCATGGACATCTACTTCCCTCCTACCTGTGTTCAGCAGGAAGCTCTGGAAGTTCATGATGGTGCAAGTAAGGGAAAGTACACTATTGGACTTGGACAAGACTGTATGGCATTCTGTTCGGAGGTGGAAGATGTCATCTCAATGAGTTTGACAGTTGTTACCTCCCTCCTCGAGAAATATGGGATTGACCCAAAACAAATTGGTCGGCTGGAAGTAGGCAGCGAGACTGTGATAGACAAAAGCAAATCCATTAAGACTTTCTTGATGCAAATTTTCGAGGAATGTGGAAATAATGACATTGAAGGTGTTGATTCAAGTAATGCATGCTATGGGGGAACTGCAGCTTTATTCAACTGTGTCAACTGGGTGGAGAGTAGTTCATGGGATGGACGCTATGGACTTGTTGTTTGCACAGACAGTGCGGTTTATGCAGAAGGACCAGCTAGGCCTACTGGAGGAGCAGCTGCTATTGCTATGCTAGTAGGGCCTGATGCTCCTATTGCATTTGAAAGCAAATTGAGGGGAAGTCATATGTCACATGCATATGATTTTTACAAGCCTAATCTTGCTAGTGAATATCCGGTTGTTGATGGGAAGCTTTCACAGACTTGTTATCTGATGGCACTTGATTCTTGCTATAAACTTTTGTGTTCCAAGTATGAGAAATTGGAGGGCAAGCAATTTTCCATTGCTGATGCTGACTACTTCGTATTTCACTCTCCATATAATAAGCTTGTACAGAAAAGTTTTGCTCGATTAGTGTTCAATGATGTCGTGAGAAATGCCAGCTCTGTCGATGAAGCTGGTAAACAAAAGCTGGAACCTTTTTCAAGTTTATCCGGTGATGAGAGCTACCAAAACCGGGATCTTGAAAAGGCATCCCAACAAGTTGCAAAGCCACTATATGATGCAAAGGTGCAACCATCTACTTTGCTACCCAAGCAAGTTGGCAACATGTACACTGCATCTCTCTATGCAGCATTTGTATCTGTTCTTCACAATAAACATAGTGAGTTGAGTGGCAAACGGGTTGTGATGTTCTCATATGGAAGTGGTTTAACTGCAACAATGTTCTCATTTCAACTTCGTGATGGTCAACATCCCTTTAGCTTGTCAAACATTGCAACTGTGATGGATGTTGCTGGAAAGTTGAAGGCAAGGCATGAGTTTCCTCCAGAAAAATTTGTCGAAATCTTGAAGTTAATGGAACATAGGTATGGGGCCAAGGACTTTGTGACAAGTAAGGACTGTAGCCTTTTACCTCCAGGCACTCACTATCTTACTGAAGTTGATTCCATGTACCGGAGATTCTACAGCAAGAAGGCTGGGAGCTGCACCTGTGAGAATGGTTCACTGGCCAATGGTCACTGA 1395 0.4301 MTKNVGILAMDIYFPPTCVQQEALEVHDGASKGKYTIGLGQDCMAFCSEVEDVISMSLTVVTSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEECGNNDIEGVDSSNACYGGTAALFNCVNWVESSSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSHMSHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKLLCSKYEKLEGKQFSIADADYFVFHSPYNKLVQKSFARLVFNDVVRNASSVDEAGKQKLEPFSSLSGDESYQNRDLEKASQQVAKPLYDAKVQPSTLLPKQVGNMYTASLYAAFVSVLHNKHSELSGKRVVMFSYGSGLTATMFSFQLRDGQHPFSLSNIATVMDVAGKLKARHEFPPEKFVEILKLMEHRYGAKDFVTSKDCSLLPPGTHYLTEVDSMYRRFYSKKAGSCTCENGSLANGH* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0479 464 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
Vvi2g0479 464 FunFam 3-hydroxy-3-methylglutaryl coenzyme A synthase 1 450 - -
Vvi2g0479 464 NCBIfam hydroxymethylglutaryl-CoA synthase 2 449 IPR010122 GO:0004421|GO:0008299
Vvi2g0479 464 CDD init_cond_enzymes 4 368 - -
Vvi2g0479 464 Gene3D - 1 451 IPR016039 GO:0016746
Vvi2g0479 464 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Vvi2g0479 464 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 449 IPR013746 GO:0004421|GO:0006084|GO:0010142
Vvi2g0479 464 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Vvi2g0479 464 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 449 - -
Vvi2g0479 464 SUPERFAMILY Thiolase-like 175 447 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0479 Vvi-Chr2 4131692 4138165 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0479 K01641 - vvi:100244379 938.332