Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0477 ATGGAAGGCAGAAATCTGCTGCGCTTCCTCTTCTTTCTTGTTACGGGGCTCTTTCTTCTCCTTTTCACCTGGTCAAACTTCCCTTATCTTCCCTCCAACAAGGCTGAGCTTCTCGACTGCACCAGTTTCTCACCATGGTGCACCTCCAAATCCAAACCCCACCTCACAACAAACCCAACCAACCCCACACGAGGCCCCCGCCGCCACCACTCTTCCGATGTCCCCCACCATCCTCTCGACCCCCTCACGGTCCAAGAAATCAACCGCGTCCGTACAATCCTCTCTTCCCACGCGCCGCTCAAAGCATCGAAGAGGTATACGATTCACGCCGTTGACCTGGAGGAGCCGGCGAAGCCACTCGTCCTCCGGTGGAAGAAAGGCAACCCCATGCTGCCACGGAGGGCTTCCGTAATAGCACTTGTGGGGGGGGAGTCGCACTTGTTGACAGTGGACTTGGCCACGAGTCAGGTCACTCGAGACGACGTCCTTCCTCCCTCCGGCTATCCGACGATGACCGTTGAGGACATGACGACGGCCACGAAGGCTCCGCTTGTGGATGGGAATTTCAACCGTACGATCATCGAGCGCGGGATTGATCTGGCGGATCTCGCTTGTTTGCCACTTTCGACGGGGTGGTTTGGGAAAAGTGAGGAGAAGAGGCGGCTGATTAAGGTTCAGTGCTACTCCTTGAAGGACACTGTCAACTTCTACATGAGGCCAATCGAAGGTCTGACGGTGCTTGTGGATTTGGACAGCAAGCAAGTGGTCGAGATTTCAGATCGAGGACAGAACATCCCCATACCCAACGCCGCCAACACAGACTATCGCTACTCCGCCCAGAGCAAACCCACGAACCTACTCAACCCGATATCCATAGAGCAGCCCAAGGGCCCGAGTTTCACAGTAGAAAACGACCACTTGATCAAATGGGCAAATTGGGAATTCCACCTCAAAGCCGAATCAAGAGCCGGAGTGATAATTTCCCGGGTCATGTTTCGGGACCCGGACACCGGATTGCTGAGGAATGTGATGTACAAAGGCTTAACATCCGAGTTTTTTGTCCCATACATGGACCCAACTGATGCATGGTACTTCAAGACTTACATGGATGCTGGCGAATACGGGTTTGGACTCCAGGCAATGCCCCTTGACCCGCTTAACGATTGTCCGCGAAACGCATACTACATGGATGGTGTGTTCGCTGCAGCTGATGGCACGCCATTCGTACAATCAAATATGATCTGCATCTTTGAGAGCTATGCAGGTGATATCGGATGGCGGCACGCAGAGAGTCCAATTACAGGCATGGGGATCCGAGAGGTGAGACCGAAGGTGACGCTTGTGGTTAGAATGGCAGCATCAGTGGCCAATTATGATTATATTGTGGATTGGGTGTTTCAGACTGATGGCCTCATCCGAATCAAGGTTGGACTTAGTGGCATCCTGATGGTGAAAGGCACCCCTTATGTGAACATGAACCAAGTGCCAGGGCAGGAATATCTCTATGGCACCCTCTTATCAGAAAATGTCATCGGGGTTATCCATGACCACTACCTCACTTTCTATCTGGACATGGACGTGGATGGCTCGGATAATTCATTTGTTAAAGTGAATCTTGAGAAGCAGATGACTGCTAATGGGGAATCGCCAAGGAGGAGCTTCTTAAAGGCTACCAGGAAGGTGGCGAAGACGGAGAAGGACGCACAAATCAAATTCAAACTCTATGAGCCAGCTGAGTTTCATGTCATCAATCCGTCCAAAAAGACACGGGTTGGGAACCCCGTTGGGTACAAGGTGGTTGCCGGTGGAACAGCTGCTAGCTTGCTCGATCATGAAGATCCTCCCCAGAAGCGTGGCGCTTTTACTAACAATCAAATATGGGTCACCCCGTATAATCGGAGTGAGCAATGGGCAGGTGGCTTGTTGGTTAGCCAGAGCCAGGGTGATGACAATCTTGCAGTATGGTCTGATCGGAATAGGCCAATTGAGAACAAGGACATTGTGGTTTGGTATACTTTGGGCTTCCATCACATACCATGTCAAGAGGACTTCCCTGTCATGCCAACAGTTTCCTCAAGCTTCGACCTAAAGCCTGTCAATTTCTTCGAGAGCAATCCCATTCTTCGGATGCCACCTAATGTCGAAAATGATCTTCCAATTTGCAAGCCAGATGCTTCAGCTTAA 2184 0.5137 MEGRNLLRFLFFLVTGLFLLLFTWSNFPYLPSNKAELLDCTSFSPWCTSKSKPHLTTNPTNPTRGPRRHHSSDVPHHPLDPLTVQEINRVRTILSSHAPLKASKRYTIHAVDLEEPAKPLVLRWKKGNPMLPRRASVIALVGGESHLLTVDLATSQVTRDDVLPPSGYPTMTVEDMTTATKAPLVDGNFNRTIIERGIDLADLACLPLSTGWFGKSEEKRRLIKVQCYSLKDTVNFYMRPIEGLTVLVDLDSKQVVEISDRGQNIPIPNAANTDYRYSAQSKPTNLLNPISIEQPKGPSFTVENDHLIKWANWEFHLKAESRAGVIISRVMFRDPDTGLLRNVMYKGLTSEFFVPYMDPTDAWYFKTYMDAGEYGFGLQAMPLDPLNDCPRNAYYMDGVFAAADGTPFVQSNMICIFESYAGDIGWRHAESPITGMGIREVRPKVTLVVRMAASVANYDYIVDWVFQTDGLIRIKVGLSGILMVKGTPYVNMNQVPGQEYLYGTLLSENVIGVIHDHYLTFYLDMDVDGSDNSFVKVNLEKQMTANGESPRRSFLKATRKVAKTEKDAQIKFKLYEPAEFHVINPSKKTRVGNPVGYKVVAGGTAASLLDHEDPPQKRGAFTNNQIWVTPYNRSEQWAGGLLVSQSQGDDNLAVWSDRNRPIENKDIVVWYTLGFHHIPCQEDFPVMPTVSSSFDLKPVNFFESNPILRMPPNVENDLPICKPDASA* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0477 727 FunFam Amine oxidase 75 169 - -
Vvi2g0477 727 SUPERFAMILY Amine oxidase catalytic domain 283 717 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 Gene3D - 170 264 - -
Vvi2g0477 727 Gene3D - 75 169 - -
Vvi2g0477 727 MobiDBLite consensus disorder prediction 51 81 - -
Vvi2g0477 727 Gene3D Copper amine oxidase, catalytic domain 284 718 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 Pfam Copper amine oxidase, N2 domain 77 160 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 ProSitePatterns Copper amine oxidase copper-binding site signature. 672 685 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 PANTHER COPPER AMINE OXIDASE 74 716 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 FunFam Amine oxidase 300 719 - -
Vvi2g0477 727 SUPERFAMILY Amine oxidase N-terminal region 167 276 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 MobiDBLite consensus disorder prediction 51 65 - -
Vvi2g0477 727 SUPERFAMILY Amine oxidase N-terminal region 75 165 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 Pfam Copper amine oxidase, enzyme domain 291 707 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 ProSitePatterns Copper amine oxidase topaquinone signature. 447 460 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 Pfam Copper amine oxidase, N3 domain 169 268 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Vvi2g0477 727 FunFam Amine oxidase 170 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0477 Vvi-Chr2 4110858 4113587 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0477 K00276 - vvi:100259834 1473.37