Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0474 ATGGTATTGTTCATCTTATTATACATGTACCAGGGTGCCGATTCAGGATCTAGACGTCTTCGTTCCAAGGGATGCAAATATTGTGCTGCAAATTCAAATGATTGGTATCCAACAATGAAATTTAAGGTTTCCTCCAAAGACTTGTTCAGAAAGACAGCAATTATAGTAGAAATGAATGAAAAGCTCCCAAAGAAGTTACAAAAGAAAAGTTTCAGACCAGTATTGCCTCTTGATTATTGGGATTTTATTCCAAAAGATCCACAACAAGAAGAGAATTGTCTGAACCCAAACAGAAGGGTTCTTTCACATGCTCAGGTTCATTATTTGTTGAAAGATATTGACCCAGGATTTATCAAGGAGTTTGTTTCAAGGATGGATTCATTTTTCCTTAACTGTTTACCTGTAACGCCCAATAATCATCGTGTGACGGAAATAACGCACGCTTTGTCCAATGGACAGACATTGATCTTTGATCAGCACAGCAGGGCCTACAAAAAGCTGGTTGATTTCAGAGGAACAGCCAATGAATTGAGTTGCCGTGTGCTGGACTGCTTAAAAACTTCCAAGCTGCGCTCTGAAAAATCAACAAGTAAAGATTCTGCTTCTAAAATGTCTGGTTTGAAATGGATCAAAGAAGTCCTTCTTGGGAAGCGAACCAACCATTCATTCCGGATGATTGTAGTTGGTGATCCAAAACTTAGACTAAGCGAAATTGGTATACCATGCCACATTGCAGAAGAGTTGCTAATATCTGAGCACTTGAACTCATGGAACTGGGAAAAAGTGACTAATGGCTGTAATTTACGTCTACTTGAAAAGGGCCAAACTTATGTCCGCAGGAAAGGTACTCTGGCTCCTGTACGTCGTATGAATGACTTCCAAGCAGGTGATATTATATATAGGCCTCTTACTGATGGGGATATTGTATTGATAAATAGGCCTCCATCAATTCATCAACACTCGGTTATTGCTTTATCTGTCAAGGTCCTTCCTTTAAACTCAGTTGTTTCTATAAACCCGCTTTGTTGTTCACCTTTTCGCGGGGATTTTGATGGCGACTGTCTTCATGGTTATATTCCTCAGTCAGTTGACTCCAGAGTTGAGCTCAGTGAGCTTGTTGCTTTGAACAGGCAGTTAATTAATAGGCAAAGTGGTAGAAATCTGCTTTCACTAAGTCAAGATAGTTTAAGCGCTGCTCATTTGGTCATGGAGGATGGGGTTCTATTGAACCTATTCCAAATGCAGCAGCTGGAAATGTTCTGCCCTTATCAATTGCAATCACCAGCCATCATCAAAGCACCATTACTTGACACTCAAGTCTGGACTGGCAAGCAATTATTCAGCATGCTTCTACCTCCAGGTTTTAATTATGTTTTTCCATTAAATGGTGTTCGTATCAGTGATGGGGAGCTTATATCATCATCTGATGGATCTGCTTGGTTACGTGATATTGATGGCAACCTTTTTAGCAGTCTTGTCAAAGATTGCCAGGGTAAGGCCCTTGACTTCCTGTATGCTGCTCAAGAAGTCCTTTGTGAGTGGTTGTCAATGAGGGGCTTGTCTGTTTCATTGTCTGACATTTACCTCTCATCTGATTCAATCTCACGGAAGAATATGATTGATGAAGTCTTTTGTGGATTACTAGTAGCAGAGCAGACATGTCATTTCAAACAGTTGCTTGTTGATTCTAGTCAGAATTTTCTCATTGGAAGTGGTGAAAATAATCAGAATGGGGTGGTTCCTGATGTGCAGAGTTTGTGGTATGAAAGACAGGGATCAGCTGCACTTTGTCAATCTTCTGTTTGTGCTTTTAAGCAAAAGTTTCGGGATATACAGAATCTAGTCTACCAATATGCAAATAAGGATAATTCACTGCTAGCTATGTTAAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTTCAGCAAGGTTTGTGTCTTGGTTTGCAACATTCATTGGTTCCTTTATCTTTTAAAATTCCCCACCAGCTCTCATGTGCAGCATGGAATAAACAGAAGGTGCCTGGTTTAATCCAGAATGATACTTCTGAATATGCTGAGTCTTACATTCCATATGCTGTCGTTGAAAATTCTTTTCTTATGGGCTTGAATCCGCTTGAATGTTTTGTTCACTCGGTGACAAGTCGAGATAGTTCCTTCAGTGATAATGCTGATCTTCCTGGTACTTTGACCCGAAGGCTTATGTTTTTCATGCGTGATTTATACATTGCATACGATGGGACGGTAAGAAATGCTTATGGGAATCAACTTGTTCAGTTCTCTTACAATATTGAGCACACATCTACCCCAAGTGATGGCATTAATGAGGACACTTGTGCCTATGATATGGGTGGCCAACCTGTTGGTTCAATATCAGCTTGTGCAATTTCTGAAGCTGCATACAGTGCTTTAGATCAACCAATTAGTCTGCTTGAACCATCACCGCTGCTGAATCTAAAGCGGGTACTAGAGTGTGGTTTGAGAAAAAGTACTGCTGACCGAACTGTGTCATTATTTTTGTCCAAGAAACTTGAAAAGCGGAAACATGGCTTTGAGTATGGAGCCTTAGAGGTTAAGAACCATTTGGAGAAATTACTCTTTTCAGACATCGTGTCTACAGTCATGATAGTCTTCTCCCCACAAAATGGTAGCAAGACACATTTCAGTCCATGGGTTTGCCATTTTCATGTATGCGAGGAAATTGCAAAAAAGAGAAGCCTAAAACCGCACTCGATTATCGATGCTCTTTACATGAAATGTAATTCCGCTAGAGCAGAATCAAAGATTAATCTTCCTGATTTGCAGATAACAAGCAATGGCAGGGATTGCTTTGTTGACATGGAGAAGGAAGATAGCGATTGTTTTTGCATCACAGTCAGCATTGTGAATTCAAAAAAGTCCTGCATACAATTGGATACTGTTCGGGACTTGGTGATACCGTTCCTTCTTGGAGCTGTGGTAAAAGGACTATTGGATGTCAAGAAGGTTGATATCTTATGGAATGATAACCCAGATTCAGATGTGTTGAAGTCCTCTTCTGGCAGACTCTATTTGAGGGTATATGTTTCAGGAGATTGTGGCAAAAAAAATTTCTGGGGTGTACTCATGGATGCTTGCCTCCAGATAATGGATATGATTGATTGGGAGCGCAGTCATCCGGACAATATACATGATATTTTTGTAGTCTATGGAATTGATGCTGGGTGGAAATACTTTCTCAATAGTTTGAAGTCTGCTATATCTGATATAGGCAAGACTGTACTCCCAGAGCATCTCCTTCTTGTTGCAAGTTGTCTTTCTGCTACTGGAGAATTTGTTGGCTTAAATGCAAAAGGAATGGCACGGCAAAAAGAACTCACATCTATCTCATCACCCTTTATGCAAGGATGCTTTTCTAGTCCTGGTTCTTGCTTCATCAAAGCTGGTAAGCGAGCAGTTGCTGATAATCTCCATGGTAGTCTAGATGCATTAGCATGGGGCAAGATTCCTTCTGTAGGAAGTGGTGGACACTTCGATATTTTATATTCTGCAAAGGGGCATGAGCTTGCTAGACCTGAAGATATATATAAGCTGTTAGGTAGCCAAACTAGTTGTCATGAGCAGAATCTAAAGGTCAAGGTACCTATCACTTGCTACCAGACAACCACTAAATGTGGGGCTCAGCTTGTATATGCAAATGGTGATTCTGCCTCAAAAGGATGCAAGAGTTTGGAAAAAATATCAAAATCAGTCTTAAGAAGTTTCTTATCGTTAAATGATATTCAGAAGCTGTCTCGTAGGTTGAAGTTTATATTACAGAAGTATCCTATTAATCATCAGTTAAGTGAAATTGACAAGACTACCTTGATGATGGCTCTTTATTTTCACCCTCGAAGAGATGAGAAGATTGGTCCTGGAGCTCAGAACATAAAGGTTCGCTATCATTCTAAATATCACAATACTCGATGCTTTTCACTGGTAAGAACGGATGGCACAGAAGAAGATTTTTCCTATCACAAGTGCGTCCACGGTGCTCTGGAAATAATTGACCCTCGGAGGGCAAGGAGCTATCAGTCAAGATGGTTGCCATACAGTGAGGTGTAA 4083 0.4031 MVLFILLYMYQGADSGSRRLRSKGCKYCAANSNDWYPTMKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNRRVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFDQHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKDSASKMSGLKWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGCNLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALSVKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGRNLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQLFSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYAAQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQNFLIGSGENNQNGVVPDVQSLWYERQGSAALCQSSVCAFKQKFRDIQNLVYQYANKDNSLLAMLKAGSKGNLLKLVQQGLCLGLQHSLVPLSFKIPHQLSCAAWNKQKVPGLIQNDTSEYAESYIPYAVVENSFLMGLNPLECFVHSVTSRDSSFSDNADLPGTLTRRLMFFMRDLYIAYDGTVRNAYGNQLVQFSYNIEHTSTPSDGINEDTCAYDMGGQPVGSISACAISEAAYSALDQPISLLEPSPLLNLKRVLECGLRKSTADRTVSLFLSKKLEKRKHGFEYGALEVKNHLEKLLFSDIVSTVMIVFSPQNGSKTHFSPWVCHFHVCEEIAKKRSLKPHSIIDALYMKCNSARAESKINLPDLQITSNGRDCFVDMEKEDSDCFCITVSIVNSKKSCIQLDTVRDLVIPFLLGAVVKGLLDVKKVDILWNDNPDSDVLKSSSGRLYLRVYVSGDCGKKNFWGVLMDACLQIMDMIDWERSHPDNIHDIFVVYGIDAGWKYFLNSLKSAISDIGKTVLPEHLLLVASCLSATGEFVGLNAKGMARQKELTSISSPFMQGCFSSPGSCFIKAGKRAVADNLHGSLDALAWGKIPSVGSGGHFDILYSAKGHELARPEDIYKLLGSQTSCHEQNLKVKVPITCYQTTTKCGAQLVYANGDSASKGCKSLEKISKSVLRSFLSLNDIQKLSRRLKFILQKYPINHQLSEIDKTTLMMALYFHPRRDEKIGPGAQNIKVRYHSKYHNTRCFSLVRTDGTEEDFSYHKCVHGALEIIDPRRARSYQSRWLPYSEV* 1361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0474 1360 Pfam Protein of unknown function (DUF3223) 1263 1335 - -
Vvi2g0474 1360 FunFam DNA-directed RNA polymerase subunit 383 521 - -
Vvi2g0474 1360 Gene3D RNA polymerase ii 249 301 - -
Vvi2g0474 1360 Pfam RNA polymerase Rpb1, domain 5 1033 1118 IPR007081 GO:0003677|GO:0003899|GO:0006351
Vvi2g0474 1360 CDD RNAP_IV_NRPD1_C 785 1175 IPR040402 -
Vvi2g0474 1360 CDD RNAP_IV_RPD1_N 61 750 IPR040403 -
Vvi2g0474 1360 PANTHER DNA-DIRECTED RNA POLYMERASE 71 1175 IPR045867 GO:0003899|GO:0006351
Vvi2g0474 1360 Pfam RNA polymerase Rpb1, domain 4 601 652 IPR007083 GO:0003677|GO:0003899|GO:0006351
Vvi2g0474 1360 Gene3D - 581 703 IPR038120 -
Vvi2g0474 1360 Gene3D - 1245 1338 - -
Vvi2g0474 1360 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 25 1176 - -
Vvi2g0474 1360 Pfam RNA polymerase Rpb1, domain 3 378 527 IPR007066 GO:0003677|GO:0003899|GO:0006351
Vvi2g0474 1360 Gene3D - 210 382 - -
Vvi2g0474 1360 Gene3D RNA polymerase Rpb1, domain 3 383 530 IPR042102 -
Vvi2g0474 1360 SMART rpolaneu7 126 403 IPR006592 GO:0003677|GO:0003899|GO:0006351
Vvi2g0474 1360 Pfam RNA polymerase Rpb1, domain 2 216 373 IPR000722 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0474 Vvi-Chr2 4042646 4075168 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0474 K16250 - vvi:100254724 2705.63