Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0462 ATGTGTCAGTTACCTTCATCTGCTGTCGCTTATAAGTTCCGTTCAGACCAAACTGGGTTGTTGTCTGCCGTAGAACAGGAACCCCACATGCTCACTCCTTTGGTCCCCAAGGCCCCAACACTTGATGATCAGCCTCATGGACAAGAACAAAACCCCAGTAAAACCCACCTCTCTCTTGCGCTTACAGAAGCCAGACACATAGCCAGTATAGCTTTTCCCATGATATTAACGGGTCTTTTACTCTACTCCCGTTCCATGATTTCCATGCTCTTCCTCGGTCGCCTAGGGGAGCTTGCCCTAGCAGGCGGTTCACTCGCGATTGGATTCGCTAACATCACCGGATATTCTATTCTCTCTGGCCTTGCTATGGGAATGGAACCAATTTGTGGGCAAGCTTTTGGAGCTCAGAGATATAAGCTTCTTGGCCTCACCTTGCAGAGAACGGTGCTTTTGCTTCTTTTAACGTCAATTCCTATAGCTTTTCTATGGTTTAACATGAAGGAAATTCTGCTCTTCTGTGGTCAAGATGAAGATATTGCCACCGAAGCTCAATCCTACATTCTTTATTCTCTTCCTGACCTTGTCGCACAGTCGTTTCTCCACCCTCTGCGTATCTATCTTCGAACCCAGTCCATAACACTGCCCCTAACCTACTGTGCAACTCTCGCAATTCTTCTCCACATCCCCATCAATTACTTTCTCGTTTCAGTGCTTGATCTCGGAATCAAAGGCGTTGCTCTAAGCGGAATTTGGACAAACCTCAACCTCGTAGGATCCTTGATAGCCTACGTTGTAGTATCGAGAGTTTACAAGAAAACTTGGGGAGGTGTCTCCTCTGAATGCTTGAGAGACTGGAAATCTCTCTTGAATTTAGCTGTTCCCAGCTGCATTTCGGTGTGTTTAGAATGGTGGTGGTACGAAATCATGATCTTGCTATGTGGGCTATTACTCAATCCTCGAGCAACCGTGGCTTCAATGGGCATTCTGATCCAAACCACAGCTCTCATCTACATTTTCCCGTCTTCTCTCAGCTTCAGCTTATCAACAAGGGTCGGAAACGAACTGGGTGCTAACCGTCCCGAGAAAGCGCGATTGGCTGCAATAGTTGGCCTCTCCTCTAGCTTCATATTGGGATTTCTGGCACTGTTTTTCGCTGTAATGGTCAGGAAAACATGGGCCACCATGTTCACTCAAGACCCCGAGATTCTCACATTAACATCAATGGTCCTACCTATAATTGGACTATGCGAGCTCGGAAACTGCCCACAAACAACAGGCTGTGGTGCCCTCAGAGGCACAGCTCGGCCTAAATTGGGAGCCAACATCAACCTAGGCTGCTTCTATCTAGTGGGCATGCCAGTTGCAGTATGGCTAGGTTTCTTCGCAGGGTTCGACTTCAAAGGCCTATGGCTGGGTCTGCTGGCCGCGCAGGGCTCATGCGCAGTGACAATGTTGTTTGTTCTGTTTCAGACCAATTGGGACCAACAAGCCCAGAGAGCCAAGGAGCTGACTGGAACCGGCTCTGATGACGATGAAGAGAGTGTGACATTGAAGGATGAAACCACCCAGGACTCCACGAATTCGTTAGTGTAA 1593 0.4815 MCQLPSSAVAYKFRSDQTGLLSAVEQEPHMLTPLVPKAPTLDDQPHGQEQNPSKTHLSLALTEARHIASIAFPMILTGLLLYSRSMISMLFLGRLGELALAGGSLAIGFANITGYSILSGLAMGMEPICGQAFGAQRYKLLGLTLQRTVLLLLLTSIPIAFLWFNMKEILLFCGQDEDIATEAQSYILYSLPDLVAQSFLHPLRIYLRTQSITLPLTYCATLAILLHIPINYFLVSVLDLGIKGVALSGIWTNLNLVGSLIAYVVVSRVYKKTWGGVSSECLRDWKSLLNLAVPSCISVCLEWWWYEIMILLCGLLLNPRATVASMGILIQTTALIYIFPSSLSFSLSTRVGNELGANRPEKARLAAIVGLSSSFILGFLALFFAVMVRKTWATMFTQDPEILTLTSMVLPIIGLCELGNCPQTTGCGALRGTARPKLGANINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGLLAAQGSCAVTMLFVLFQTNWDQQAQRAKELTGTGSDDDEESVTLKDETTQDSTNSLV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0462 530 CDD MATE_eukaryotic 63 499 IPR045069 GO:0042910|GO:1990961
Vvi2g0462 530 MobiDBLite consensus disorder prediction 500 530 - -
Vvi2g0462 530 MobiDBLite consensus disorder prediction 34 55 - -
Vvi2g0462 530 Pfam MatE 294 457 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g0462 530 Pfam MatE 73 233 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g0462 530 NCBIfam MATE family efflux transporter 73 470 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi2g0462 530 PANTHER MULTIDRUG RESISTANCE PROTEIN 60 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0462 Vvi-Chr2 3894151 3895743 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0462 K03327 - vvi:100265094 1006.51