Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0453 ATGAGGCACAAGCCAAAATACACCACACCTGACATCTATACTCCGATTGTCAGCTCCAAGCTTCCCAGTATGAGCGACTTGCGCATCCTCTTTATCTTCTTCCTCTGCTTCATCTCCTCCATCCATGCAGCCACCTTCCAAATCACCAACCAGTGTTCTTACACCGTCTGGGCAGCTGCCTCTCCCGGTGGCGGCCGCCGCCTGGACCGCGGCCAAAGCTGGACCCTCAACGTGCCCGCTGGCACCAAAATGGCCCGAATCTGGGGTCGAACCAACTGCCACTTCGATGCCAGTGGTCGTGGCCGGTGCGATACCGGTGACTGTGGCGGCGTCCTGAACTGTCAAGGCTGGGGTTCTCCACCAAACACACTAGCAGAATACGCCTTGAACCAGTTTGGTAACAAGGATTTTTTCGATATATCTCTCGTTGATGGGTTCAACATCCCTATGGACTTCAGCCCCACCAGCCGCGGGTGCCGTGGAATCAAGTGCACGGCGAATATCAACGGGCAATGCCCGCAGGCGTTGAAAGCTCCGGGAGGGTGCAATAACCCGTGTACCGTGTTCAAGACTCCGCAGTACTGCTGCAACAATATTAAATGTGGACCGACAGATTATTCGAGATTTTTCAAGACCAGGTGCCCAGATGCGTACAGTTATCCTCAGGATGATCCCACAAGCACATTTACATGCCCTGGTGGAACCAACTATAGGGTTGTGTTCTGCCCTAGAGGCTCTTCCAACAATATTTTTCCTCTGGAGATGTATGGAAGTGATAGTGAGGAGTAA 789 0.5298 MRHKPKYTTPDIYTPIVSSKLPSMSDLRILFIFFLCFISSIHAATFQITNQCSYTVWAAASPGGGRRLDRGQSWTLNVPAGTKMARIWGRTNCHFDASGRGRCDTGDCGGVLNCQGWGSPPNTLAEYALNQFGNKDFFDISLVDGFNIPMDFSPTSRGCRGIKCTANINGQCPQALKAPGGCNNPCTVFKTPQYCCNNIKCGPTDYSRFFKTRCPDAYSYPQDDPTSTFTCPGGTNYRVVFCPRGSSNNIFPLEMYGSDSEE* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0453 262 Pfam Thaumatin family 50 243 IPR001938 -
Vvi2g0453 262 ProSitePatterns Thaumatin family signature. 99 114 IPR017949 -
Vvi2g0453 262 Gene3D Thaumatin 43 245 IPR037176 -
Vvi2g0453 262 PANTHER OS03G0233200 PROTEIN 32 243 IPR001938 -
Vvi2g0453 262 FunFam Thaumatin I 44 243 - -
Vvi2g0453 262 SUPERFAMILY Osmotin, thaumatin-like protein 44 244 IPR037176 -
Vvi2g0453 262 CDD TLP-P 46 243 - -
Vvi2g0453 262 PIRSF PR5 12 259 IPR001938 -
Vvi2g0453 262 ProSiteProfiles Thaumatin family profile. 43 245 IPR001938 -
Vvi2g0453 262 SMART tha2 46 243 IPR001938 -
Vvi2g0453 262 PRINTS Pathogenesis-related protein signature 99 128 IPR001938 -
Vvi2g0453 262 PRINTS Pathogenesis-related protein signature 136 152 IPR001938 -
Vvi2g0453 262 PRINTS Pathogenesis-related protein signature 86 97 IPR001938 -
Vvi2g0453 262 PRINTS Pathogenesis-related protein signature 64 73 IPR001938 -
Vvi2g0453 262 PRINTS Pathogenesis-related protein signature 233 242 IPR001938 -
Vvi2g0453 262 PRINTS Pathogenesis-related protein signature 45 57 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0453 Vvi-Chr2 3824931 3825719 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0453 23 248 Receptor kinase-like Gene Family AT5G38280 37.154 8.97e-46 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0453 - - vvi:100263272 559.296