Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0452 ATGCGCTTCACCACCACCCTCCCAATTCTCTTCCCTCTCCTCCTCAGCCTCCTCTTTACCTCCACCCATGCAGCCACCTTCGACATCCTCAACAAATGCACCTACACCGTCTGGGCAGCCGCCTCCCCCGGTGGTGGACGGAGACTTGACTCCGGCCAGTCCTGGACAATCACCGTCAACCCCGGCACCACCAATGCTCGCATCTGGGGCCGAACCTCATGCACCTTCGACGCCAATGGGCGTGGCAAATGCGAAACTGGTGACTGCAATGGCCTCCTCGAATGCCAGGGCTACGGTTCTCCCCCAAACACCCTCGCTGAATTCGCTCTAAACCAGCCCAATAACCTCGACTACATCGACATCTCCCTTGTCGATGGCTTCAACATCCCCATGGACTTCAGCGGCTGCCGCGGCATCCAGTGCTCCGTTGACATCAATGGGCAATGCCCCAGTGAGTTGAAGGCCCCCGGTGGATGCAACAACCCGTGTACAGTGTTCAAGACCAATGAGTATTGTTGCACTGATGGACCTGGAAGCTGTGGTCCGACCACATACTCCAAATTCTTCAAGGACAGGTGCCCAGATGCTTATAGCTACCCTCAGGATGACAAAACCAGCTTGTTCACCTGTCCTTCTGGTACCAACTACAAGGTCACGTTTTGCCCTTGA 669 0.5605 MRFTTTLPILFPLLLSLLFTSTHAATFDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKCETGDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSGCRGIQCSVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGSCGPTTYSKFFKDRCPDAYSYPQDDKTSLFTCPSGTNYKVTFCP* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0452 222 PANTHER OS03G0233200 PROTEIN 14 222 IPR001938 -
Vvi2g0452 222 PRINTS Pathogenesis-related protein signature 212 221 IPR001938 -
Vvi2g0452 222 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vvi2g0452 222 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vvi2g0452 222 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vvi2g0452 222 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vvi2g0452 222 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vvi2g0452 222 Gene3D Thaumatin 25 222 IPR037176 -
Vvi2g0452 222 SUPERFAMILY Osmotin, thaumatin-like protein 24 222 IPR037176 -
Vvi2g0452 222 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vvi2g0452 222 SMART tha2 27 222 IPR001938 -
Vvi2g0452 222 PIRSF PR5 1 222 IPR001938 -
Vvi2g0452 222 FunFam Thaumatin I 25 222 - -
Vvi2g0452 222 ProSiteProfiles Thaumatin family profile. 24 222 IPR001938 -
Vvi2g0452 222 Pfam Thaumatin family 31 222 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0452 Vvi-Chr2 3821960 3822628 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0452 6 222 Receptor kinase-like Gene Family AT5G38280 37.805 6.16e-44 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0452 - - vvi:100232841 448.743