Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0448 ATGGGCCTCTTCAAAACCCCTTTAATTTCCTCATTCCTTCTCACCACCCTATTCTTCGCCTCCTGCCACGCAGCCACGCTGATCAACATCCAAAACCATTGCTCCTACACAGTTTGGGCGGCGGCGGTACCAGGTGGGGGCAGGCAGCTTGGTCCGGGCCAATCCTGGAGCCTCGATGCGAACCCTGGCACAGCCCGTGTGTGGGCACGTACCAACTGCACCTTTGATGGGTCAGGGAACGGGACGTGTGAGACCCGAGATTGTGGTGGCCGCCTCCAATGCCAAGCCTATGGTACACCCCCTAACACCTTGGCCGAATTCGCACTTAACCAATTCAACAACATGGACTTCTTCGATATATCTTTGGTTGATGGATTTAATGTGCCCATGGCTCTTAATTCTACTTCCAATGGGTGCACCCGTGGCATCCAATGCAGCGCCGACATAGTCGGACAGTGCCCTGATGAGCTCCGAGCTCCCGGTGGTTGCAACAATCCATGCACTGTTTTCAGGACCGATGAATATTGTTGTTATTCTGGGAACTGTGGCCCTACAACTTACTCCAAGTTTTTCAAGGATAGGTGTCCGGTGGCTTATAGCAACCCTAATGATGATCAAACAAGCACCTTTACATGCCCTGGTGGTACTAACTATGATGTTATCTTCTGCCCATGA 675 0.52 MGLFKTPLISSFLLTTLFFASCHAATLINIQNHCSYTVWAAAVPGGGRQLGPGQSWSLDANPGTARVWARTNCTFDGSGNGTCETRDCGGRLQCQAYGTPPNTLAEFALNQFNNMDFFDISLVDGFNVPMALNSTSNGCTRGIQCSADIVGQCPDELRAPGGCNNPCTVFRTDEYCCYSGNCGPTTYSKFFKDRCPVAYSNPNDDQTSTFTCPGGTNYDVIFCP* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0448 224 ProSiteProfiles Thaumatin family profile. 25 224 IPR001938 -
Vvi2g0448 224 PIRSF PR5 3 224 IPR001938 -
Vvi2g0448 224 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Vvi2g0448 224 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Vvi2g0448 224 PRINTS Pathogenesis-related protein signature 46 55 IPR001938 -
Vvi2g0448 224 PRINTS Pathogenesis-related protein signature 116 132 IPR001938 -
Vvi2g0448 224 PRINTS Pathogenesis-related protein signature 66 77 IPR001938 -
Vvi2g0448 224 PRINTS Pathogenesis-related protein signature 79 108 IPR001938 -
Vvi2g0448 224 PRINTS Pathogenesis-related protein signature 214 223 IPR001938 -
Vvi2g0448 224 SMART tha2 28 224 IPR001938 -
Vvi2g0448 224 Pfam Thaumatin family 32 224 IPR001938 -
Vvi2g0448 224 SUPERFAMILY Osmotin, thaumatin-like protein 26 224 IPR037176 -
Vvi2g0448 224 Gene3D Thaumatin 26 224 IPR037176 -
Vvi2g0448 224 PANTHER OS03G0233200 PROTEIN 15 224 IPR001938 -
Vvi2g0448 224 FunFam Thaumatin I 26 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0448 Vvi-Chr2 3804712 3805386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0448 12 224 Receptor kinase-like Gene Family AT5G38280 35.833 1.63e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0448 - - vvi:100265026 488.419