Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0447 ATGGGCCTCTGCAAAATCCTCTCCATTTCCTCATTCCTTCTCACCACCCTATTCTTCACCTCCAGCTATGCAGCAACCTTCAACATCCAAAACCGTTGCTCCTACACAGTTTGGGCGGCGGCAATCCCAGGCGGGGGCATGCGGCTTGGCTCAGGCCAATCCTGGAGCCTCGATGTGAAGGCCGCCACCACCGGAAGCCGTGTTTGGGGCCGTACCGACTGCAGCTTCGATGCGTCAGGGAATGGGAAGTGTGAGACCGGGGACTGTGGTGGCCGCCTCCAATGCAAGGCCTATGGTACACCCCCTAACACCTTAGCCGAATTCGCACTTAACCAATACAGCAACTTGGACTTCTTTGATATATCTTTGGTTGATGGATTTAATGTGCCTATAGCCTTTAATCCTACTTCCAATGGGTGCACCCGTGGCATCAGTTGCACCGCCGACATCGTGGGAGAGTGCCCCGCTGCGCTAAAGACTACCGGTGGTTGCAACAACCCATGCACCGTTTTCAAGACCGATGAATATTGTTGCAATTCTGGGAGCTGTAATGCTACAGATTTCTCAAGGTTTTTCAAGACTAGGTGCCCTGATGCTTATAGCTACCCTAAGGACGATCAGACAAGCACCTTCACATGCCCTGGCGGTACCAATTATGAAGTTATCTTCTGCCCATCAGCAGTGCCACAAACATGTGTTTTTATTATAAATTAA 714 0.5112 MGLCKILSISSFLLTTLFFTSSYAATFNIQNRCSYTVWAAAIPGGGMRLGSGQSWSLDVKAATTGSRVWGRTDCSFDASGNGKCETGDCGGRLQCKAYGTPPNTLAEFALNQYSNLDFFDISLVDGFNVPIAFNPTSNGCTRGISCTADIVGECPAALKTTGGCNNPCTVFKTDEYCCNSGSCNATDFSRFFKTRCPDAYSYPKDDQTSTFTCPGGTNYEVIFCPSAVPQTCVFIIN* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0447 237 PANTHER OS03G0233200 PROTEIN 12 225 IPR001938 -
Vvi2g0447 237 PIRSF PR5 2 235 IPR001938 -
Vvi2g0447 237 Gene3D Thaumatin 25 225 IPR037176 -
Vvi2g0447 237 SUPERFAMILY Osmotin, thaumatin-like protein 24 226 IPR037176 -
Vvi2g0447 237 SMART tha2 27 225 IPR001938 -
Vvi2g0447 237 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vvi2g0447 237 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vvi2g0447 237 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Vvi2g0447 237 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vvi2g0447 237 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vvi2g0447 237 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vvi2g0447 237 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vvi2g0447 237 FunFam Thaumatin I 25 225 - -
Vvi2g0447 237 ProSiteProfiles Thaumatin family profile. 24 225 IPR001938 -
Vvi2g0447 237 Pfam Thaumatin family 31 225 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0447 Vvi-Chr2 3799837 3800550 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0447 12 228 Receptor kinase-like Gene Family AT5G38280 36.885 2.31e-44 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0447 - - vvi:100246096 493.812