Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0445 ATGGGCCTCTTCAAAAGCCTCTCCATTTCCTCCTTGCTTCTCATCACCCTCTTCTTCACCTCCGCCCATGCAGCCATTTTCAATATCCAAAACCGTTGTTCCTACACAGTTTGGGCAGCAGCTGTGCCGGGTGGGGCCTATGGTGCACCCCCCAACACCTTGGCTGAATTCGCACTTAACCAGTTCAACAACCTGGACTTCTTTGATATATCCTTGGTCGATGGGTTTAATGTGCCTATGGCTTTTAGCCCCACCTCCAATGGGTGCTCCCGTGGAATACGGTGCACGGCCAACATCGTGGGACAGTGCCCCAGTCAGCTTCGAGCTCAGGGTGGCTGCAATAACCCATGCACCGTTTTCAAGACCGATCAGTACTGTTGCAATTCCGGGAGCTGTGGCCCTACAGATTACTCAAGGTATTTCAAGACTAGGTGCCCTGATGCTTACAGCTACCCTAAGGATGATCAAACCAGCACCTTTACATGCCCTGGTGGTACCAACTATGATGTTATCTTCTGCCCATAA 525 0.5124 MGLFKSLSISSLLLITLFFTSAHAAIFNIQNRCSYTVWAAAVPGGAYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMAFSPTSNGCSRGIRCTANIVGQCPSQLRAQGGCNNPCTVFKTDQYCCNSGSCGPTDYSRYFKTRCPDAYSYPKDDQTSTFTCPGGTNYDVIFCP* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0445 174 SUPERFAMILY Osmotin, thaumatin-like protein 25 174 IPR037176 -
Vvi2g0445 174 ProSiteProfiles Thaumatin family profile. 33 174 IPR001938 -
Vvi2g0445 174 Gene3D Thaumatin 44 174 IPR037176 -
Vvi2g0445 174 Pfam Thaumatin family 46 174 IPR001938 -
Vvi2g0445 174 SMART tha2 27 174 IPR001938 -
Vvi2g0445 174 PRINTS Pathogenesis-related protein signature 164 173 IPR001938 -
Vvi2g0445 174 PRINTS Pathogenesis-related protein signature 66 82 IPR001938 -
Vvi2g0445 174 PRINTS Pathogenesis-related protein signature 29 58 IPR001938 -
Vvi2g0445 174 PIRSF PR5 2 46 IPR001938 -
Vvi2g0445 174 PIRSF PR5 41 174 IPR001938 -
Vvi2g0445 174 PANTHER OS03G0233200 PROTEIN 46 174 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0445 Vvi-Chr2 3790321 3790998 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0445 50 174 Receptor kinase-like Gene Family AT5G38280 37.589 8.98e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0445 - - vvi:100254732 336.265