Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0444 ATGGGCCTCTTCAAAAGCCTCTCCATTTCCTCCTTCCTTCTCATCACCCTCTTCTTCACCTCCGCCCATGCAGCCATTTTCAATATCCAAAACCGTTGTTCCTACACAGTTTGGGCAGCAGCTGTGCCGGGTGGGGGTAGGCGCCTCGACCCGCGTCAGTCCTGGAGCTTGACTGTGAACCCTGGGACAACTGGAGCCCGTATTTGGGCCCGGACCGGCTGCAGCTTCAATGGGGCTGGGCGTGGGCGTTGTCAGACCGGGGACTGCGGTGGCGTCCTCCAATGCACAGCCTATGGTGCACCCCCCAACACCTTGGCTGAATTCGCACTTAACCAGTTCAACAACCTGGACTTCTTTGATATATCCTTGGTCGATGGGTTTAATGTGCCTATGGCTTTTAACCCTACCTCCAATGGGTGCTCCCGTGGAATACGGTGCACGGCCAACATCGTGGGACAGTGCCCCAATCAGCTCCGAGCTCAGGGTGGCTGCAATAACCCATGCACCGTTTTCAAGACCGATCCGTACTGTTGCAATTCCGGGAGCTGTGGCCCTACAGATTACTCAAGGTATTTCAAGACTAGGTGCCCTGATGCTTACAGCTACCCTAAGGATGATCAAACCAGCACCTTTACATGCCCTGGTGGTACCAACTATGATGTTATCTTCTGCCCATAA 678 0.5442 MGLFKSLSISSFLLITLFFTSAHAAIFNIQNRCSYTVWAAAVPGGGRRLDPRQSWSLTVNPGTTGARIWARTGCSFNGAGRGRCQTGDCGGVLQCTAYGAPPNTLAEFALNQFNNLDFFDISLVDGFNVPMAFNPTSNGCSRGIRCTANIVGQCPNQLRAQGGCNNPCTVFKTDPYCCNSGSCGPTDYSRYFKTRCPDAYSYPKDDQTSTFTCPGGTNYDVIFCP* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0444 225 ProSiteProfiles Thaumatin family profile. 24 225 IPR001938 -
Vvi2g0444 225 FunFam Thaumatin I 25 225 - -
Vvi2g0444 225 PANTHER OS03G0233200 PROTEIN 13 225 IPR001938 -
Vvi2g0444 225 SMART tha2 27 225 IPR001938 -
Vvi2g0444 225 Pfam Thaumatin family 31 225 IPR001938 -
Vvi2g0444 225 ProSitePatterns Thaumatin family signature. 80 95 IPR017949 -
Vvi2g0444 225 PRINTS Pathogenesis-related protein signature 45 54 IPR001938 -
Vvi2g0444 225 PRINTS Pathogenesis-related protein signature 215 224 IPR001938 -
Vvi2g0444 225 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Vvi2g0444 225 PRINTS Pathogenesis-related protein signature 80 109 IPR001938 -
Vvi2g0444 225 PRINTS Pathogenesis-related protein signature 67 78 IPR001938 -
Vvi2g0444 225 PRINTS Pathogenesis-related protein signature 117 133 IPR001938 -
Vvi2g0444 225 CDD TLP-P 27 225 - -
Vvi2g0444 225 Gene3D Thaumatin 25 225 IPR037176 -
Vvi2g0444 225 PIRSF PR5 2 225 IPR001938 -
Vvi2g0444 225 SUPERFAMILY Osmotin, thaumatin-like protein 25 225 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0444 Vvi-Chr2 3775419 3776096 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0444 6 225 Receptor kinase-like Gene Family AT5G38280 37.652 2.64e-43 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0444 - - vvi:100249610 479.559