Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0416 ATGGACGGTCTCGCGCTTACTACCTCCTTCTCCATCAATCGCTCCCATGTCGCCACTTTCTCTTCCCGAAGAATCTTCTTCTCTCGTAACCCTAAGCTTCGGGTTTTTGCCTCCAAAGACGATCCTAAGCTCGATAAATGGGACCAAATGGAGCTCAAGTTCGGTCGTTTGCTCGGTGAAGACCCCAAGCTAACCCTAGCCAAGATAATGGGTAGGAAATCAAATCCTGATGTCACTCCTCTCGAAATTGAGAAAAAATTTCACAAGAAACAAGGTAAATTAGCTGATGCAGAAGTACCGGACATTGTATTTGATGGGTCTGAACAAGGGGGGTCGCCCAATTCTTTGAGTGGATTGAATTTGGTGCGGCCTGTTCCAAAGAAAGGAATCAAGTTTGAGGGGGATGATAAATTGAATGAGATGAAGAAGCAGAGTCAGCCAGCTGGGAAGGCAGTACAGAATACTAAGAATACTGTTCCTAATGTTATATTGCGAAAACCGACTGTGTTTAATGAAGATGATGTTGATAGCAAGCCTTCCAGGTTGAGGATGAAACCAAATTTGTCTCTGAAAATGAAGAAAGAAGCGAAGTTCAGTGACATGACATTATTAAGAAAGCCTGAGAAATTAAGTGCTGACGCAGAGAATGAAACAAAGCAAGAGTCTTCTGATGATGCCAGAGCTCTAGCTACTGATGATACTGAATTGAAATTGCAAGAGGAAGGAACAGATGATAAAATTAATGATGTCATGCTGATGAGAAAGCCTGAGCCTACAATTATCAGTGCAAACCTTGATGAGAAACTAGAGCATTCTGGTGATGCAGAAGCAAAGATTAGCATTGGCATTGAGGAGGGTAGTTCATCAGGTTCATCTGAATATACTGGAGCTGCTAATTCCATGAATAATGATATTGAGGAATCTCTAGAAACTAGGGATGACTCATTCTCAATGGGACCTGAGCTAGTAGATAACTCCATAATTGGATTACAGCCACTTGAGCATAGTGATATCATTGATATGGGACCTGCTAAAGTGGAAACTGCTGCAAGTGAACCATCAAATCGAAAATCAGTTGACCCGAAAGGCAAGTTGTCTATGGAAGCTGCGCTGCAAGGAAAACCAAAGAGGTTAGAACAATCTGTAAAAGAAATGTCAAATCTGAGTCAACCGGAAACAGTGCTAGCGAATCCTGAGAGTTATGGCAATTCTGTTGAGCTTGAGAATTTCCTTGCAACATCATCTTTGAAGGGACATGAAGATACAGACTGGTCAAGGGCAGAAGATCTGGTTAAGACCGGAGGAAGGGAAGAAGTAGAGTTGATAAGCTCTAGCACCAGAGGCTTTGTTGTATCTTTTGGCTCTTTGATAGGATTTTTGCCATATCGTAATCTTGCTGCTAAGTGGAAGTTCTTGGCCTTTGAGTCATGGTTGAGAAGGAAAGGTTTAGACCCATCAATGTACAGGCAAAATCTAGGTATTGTGGGAAGTCATGAAGTTGCGAACAATCCCTCTCCTGATGCAAACCCAGGTCCAGAAATACATAAACAGCTCGAGGGAGAAATTTCACCGAATATGAACTTGGAGGATCTTCTTAGGATTTATGACCAAGAGAAAATCAAATTCCTGTCATCGTTTGTTGGTCAGAAAATCAATGTGAATGTGGTAATGGCTGATAGAAAAACTAGAAGACTAATATTTTCCGGGAGGCCAAAGGAAAAGGAAGAAATGGTTGAGAAAAAGAGAAGTCTCATGGCAAAACTTAGCATTGGGGACATTGTGAAATGTCGCATAAAAAAGATTACTTACTTCGGTATTTTTGTTGAGGTTGAAGGAGTACCTGCACTGGTTCACCAGACTGAAGTGTCATGGGATGCAACTCTGGATCCTGCATCATATTTCAAAATTGGTCAGATTGTTGAGGCAAAAGTCCACCAATTGGATTTTTCTCTTGAACGCATTTTCTTATCATTAAAGGAGATAACGCCAGATCCACTAATCGAGGCTTTGGAGTTTGTAGTTGGTGATAATCCCTTGGATGGGAGATTAGAAGCAGCACAAGCAGATACTGAGTGGCCTGATGTGGAATCACTCATCAAAGAACTGGAACAGATTGAGGGGATCCAGTCTGTATCAAAAGGCCGATTTTTCCTGAGCCCTGGTTTAGCTCCCACATTTCAGGTTTACATGGCATCCATGTTTGAGAATCAATACAAGTTACTTGCACGATCTGGAAACAAAGTACAAGAGGTGATAGTTGAAGCATCCTTGGGTAAAGAAGACATGAAATCTGCAATTCTAACCTGTACCAATAGAGTGTAA 2322 0.4165 MDGLALTTSFSINRSHVATFSSRRIFFSRNPKLRVFASKDDPKLDKWDQMELKFGRLLGEDPKLTLAKIMGRKSNPDVTPLEIEKKFHKKQGKLADAEVPDIVFDGSEQGGSPNSLSGLNLVRPVPKKGIKFEGDDKLNEMKKQSQPAGKAVQNTKNTVPNVILRKPTVFNEDDVDSKPSRLRMKPNLSLKMKKEAKFSDMTLLRKPEKLSADAENETKQESSDDARALATDDTELKLQEEGTDDKINDVMLMRKPEPTIISANLDEKLEHSGDAEAKISIGIEEGSSSGSSEYTGAANSMNNDIEESLETRDDSFSMGPELVDNSIIGLQPLEHSDIIDMGPAKVETAASEPSNRKSVDPKGKLSMEAALQGKPKRLEQSVKEMSNLSQPETVLANPESYGNSVELENFLATSSLKGHEDTDWSRAEDLVKTGGREEVELISSSTRGFVVSFGSLIGFLPYRNLAAKWKFLAFESWLRRKGLDPSMYRQNLGIVGSHEVANNPSPDANPGPEIHKQLEGEISPNMNLEDLLRIYDQEKIKFLSSFVGQKINVNVVMADRKTRRLIFSGRPKEKEEMVEKKRSLMAKLSIGDIVKCRIKKITYFGIFVEVEGVPALVHQTEVSWDATLDPASYFKIGQIVEAKVHQLDFSLERIFLSLKEITPDPLIEALEFVVGDNPLDGRLEAAQADTEWPDVESLIKELEQIEGIQSVSKGRFFLSPGLAPTFQVYMASMFENQYKLLARSGNKVQEVIVEASLGKEDMKSAILTCTNRV* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0416 773 Gene3D - 571 662 IPR012340 -
Vvi2g0416 773 MobiDBLite consensus disorder prediction 200 241 - -
Vvi2g0416 773 SUPERFAMILY Nucleic acid-binding proteins 574 664 IPR012340 -
Vvi2g0416 773 Pfam S1 RNA binding domain 589 659 IPR003029 GO:0003676
Vvi2g0416 773 SMART S1_6 432 570 IPR022967 -
Vvi2g0416 773 SMART S1_6 589 659 IPR022967 -
Vvi2g0416 773 ProSiteProfiles S1 domain profile. 591 659 IPR003029 GO:0003676
Vvi2g0416 773 PANTHER NUCLEIC ACID-BINDING, OB-FOLD-LIKE PROTEIN 12 773 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0416 - - vvi:100265091 1494.95