Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0388 ATGGAGGAACCTCCATCGCAGGCTCCATGTTGGAGCAACATAGTCAAGGCGCAACCACCCCCAAAACCCCACCACCACCAGCAAGCCTTGATTCCCCCGAATCTCCCTGTCGGCAGCTGCAAATCCAGCAAAGGCATCAGCATAGCCGTCGTCGATGCCACCGCCATTATACAAGGCGGAGAGCAGCTCACTCGATGCGCCGACAAGTTCGTATCTGTCTCCGAAGTCATCGACGAAGTCCGTGACCCCGTCTCCCGCCACAAGCTCGCCTTTGTTCCCTTCACTATCGACACCATGGAACCATCTCCCGAATCCCTCAAAAAAGTTATCAACTTCGCGAGAGCCACTGGTGACTTGCAGACGCTTTCAGATGTTGATCTTAAACTCATTGCATTGACTTATATGCTGGAAGCTCAGATCCATGGGACTAAGCATCTTAGGGACAGCCCTCCGCCTATCCATGCGGTTAATGTGAAAAGGCTGCCTGAGAAGGATATGCCTGGGTGGGGCTCTAATGTTCCTAATTTGGAGGAGTGGGAGGCATTAGAACATGAAGTCGAGGATGGATCAAACCCAAATTCGAGAATCCTACCATTGACCGATTTAAATTTAAATGTTATCCCTGCAGATGATCACTCTGAAAATGGTTTAACAGGAAATGGAGGTGAAGCTCGATCTGAGGATCAAGAGGATACTGATCCCACATCGAGAAGACCTATGAGATATTTGCCTAAGAAGAAAGAAATAAAAATTGAGGGGAAGAAGATGGTGGCAGATGGAGTTGATGCCTCTCAGGGGCAATACGGTGATAATGCTGGTGATTGGTTGCCTGCTGTAAGTCGAAGTACTCATCGAAGATACCTTAGAAGAAAAGCTAGACACGAATTGCATGAAGCATCATTGGGAAATGGTCATCAGCATGATGCAGAGGAAAACATGGAAAATAACATCATTGAGGACACTGAATGCGCTGATGAGCTGATGCATGAAAGTCCTGAAGGAAAGCTTGTTGGAAATGGGATAACAGAGGAAAGTGGGACCACTGGAGGCAAGGAGGGTGATGGAAATCTTTCCTCAATCCTACAACAAATGAGGCTCGAAGAAGGTTCACTGAAGGATCTTCAAGAAGGGAAAGAGGGGGACTTCTTGTGTGGGGGATCTGAGTCCAACAATTGCACAGTGGCAGAATCTACTTCTGATAATAATGCACATATAGCTGTTGAAGAGGATGAGGTTGAAACTATCGATGAAAGGTTGGACCACTTGGAGATCTCAAGCCAGATGAGTGAAAGTGTTGATGTGTCATATATAGATGACGAAAGTAGTGAGCAAAGCTGGATGTTGAAATCCTTGTCTGATTCGAGTGTAGCTTGTGTAACCAGTGATTTCGCAATGCAAAATGTTCTTCTGCAGATGGGTTTGCGCCTGCTGGCACCAGGAGGGATGCAGATACGCCAGCTGCACAGATGGATTCTTAAATGCCATGCCTGCAATGAGGTGACTGCTGAAATTGGGAGAATTTTCTGCCCAAGGTGTGGCAATGGTGGCACTTTACGCAAGGTAGCTGTTACAGTTGGTGAGAATGGAATTATTCTAGCAGCTCGTAAGCCACGTATTAGCTTGCGTGGCACAAAGTTTTCACTGCCTTTGCCGCGAGGTGGAAGAGATGCCATTACTAAGAACCCGATTTTACGTGAAGATCAACTCCCTCACAAGCTCCTGCACCCCAAGACAAAGAAGAAAGCTAATAAACCAGGAGATGAATTCTTTGCTTCAGACGATTTCTTCAGCCACCATACTGATAAGAAAACTTCTTTAAGGCCTCCTGTAAGAGAAGCATTGGCGGTCTTCAGCGGAAAGAGGAATCCTAATGATAATCATTTCTCACGTTCGAAGCGGTAG 1902 0.4674 MEEPPSQAPCWSNIVKAQPPPKPHHHQQALIPPNLPVGSCKSSKGISIAVVDATAIIQGGEQLTRCADKFVSVSEVIDEVRDPVSRHKLAFVPFTIDTMEPSPESLKKVINFARATGDLQTLSDVDLKLIALTYMLEAQIHGTKHLRDSPPPIHAVNVKRLPEKDMPGWGSNVPNLEEWEALEHEVEDGSNPNSRILPLTDLNLNVIPADDHSENGLTGNGGEARSEDQEDTDPTSRRPMRYLPKKKEIKIEGKKMVADGVDASQGQYGDNAGDWLPAVSRSTHRRYLRRKARHELHEASLGNGHQHDAEENMENNIIEDTECADELMHESPEGKLVGNGITEESGTTGGKEGDGNLSSILQQMRLEEGSLKDLQEGKEGDFLCGGSESNNCTVAESTSDNNAHIAVEEDEVETIDERLDHLEISSQMSESVDVSYIDDESSEQSWMLKSLSDSSVACVTSDFAMQNVLLQMGLRLLAPGGMQIRQLHRWILKCHACNEVTAEIGRIFCPRCGNGGTLRKVAVTVGENGIILAARKPRISLRGTKFSLPLPRGGRDAITKNPILREDQLPHKLLHPKTKKKANKPGDEFFASDDFFSHHTDKKTSLRPPVREALAVFSGKRNPNDNHFSRSKR* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0388 633 MobiDBLite consensus disorder prediction 207 241 - -
Vvi2g0388 633 Pfam PIN domain of ribonuclease 50 136 IPR033411 -
Vvi2g0388 633 CDD PIN_Nob1-like 50 161 IPR033411 -
Vvi2g0388 633 MobiDBLite consensus disorder prediction 333 355 - -
Vvi2g0388 633 FunFam 20S-pre-rRNA D-site endonuclease NOB1 40 160 - -
Vvi2g0388 633 MobiDBLite consensus disorder prediction 341 355 - -
Vvi2g0388 633 Gene3D - 478 552 IPR036283 -
Vvi2g0388 633 Pfam Nin one binding (NOB1) Zn-ribbon like 484 554 IPR014881 -
Vvi2g0388 633 PANTHER RNA-BINDING PROTEIN NOB1 37 633 IPR039907 -
Vvi2g0388 633 SUPERFAMILY NOB1 zinc finger-like 484 547 IPR036283 -
Vvi2g0388 633 Coils Coil 405 425 - -
Vvi2g0388 633 Gene3D - 40 153 - -
Vvi2g0388 633 MobiDBLite consensus disorder prediction 224 241 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0388 K11883 - vvi:100258154 1233.01