Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0359 ATGGCTCTCACCTTCTTCTCCCTCACTACACCCTTTATGTATCCGCACTCTCTTTGTTTAAAACCCTCTATTTCCCAATTCAAATCACTTCATGGTTTCTTTCCTCTCCACCGCCGACTACGATCCCCGGCGGTAGTCGTTTCCGCCGGAAATTTTGACCCAAATCCTGCTGACGACGACCCACCCGAGGCCCCCGAAGATTCCGCGCATGGGCTGTTTAAGTTCCAGCAGATTCAGCGTCAAGCCGCTAGAGCACGAAAACGCGAAGAAGAGCAGTTCAAGAAGGACCAGTCCACCTTCCTCAACGCCATTGCGGATGTTGAAGACGCACCTGATAACGTTGATTCGATCGATGCCGAGGGTGCTGGGGACGATTTGTTTGGGGAGATTGATAAGGCCATTGCAATGAAACGGAAAGAATTCGTGAAGCAAGGGCTTTTGAAGCCTAACCCCAAGAAAGAGAGCGTGGTTCCCGAGGAGATCGCTGAGGGGATTGAAGAATTGGAGCCTGATGAGGTTGTTGACTTGGAGGAAATTAACGAGCTTCGAGGGCTCACTGTTATTTCAGAGGATTTGGATGATGAAGAGTCGGAGAAGCTCGATGACGAGGAGAGTGATTCAGGTAATGTTAATGGTGGGTCGTCTTCACATTCGTCGTTTGATGTCGATTTCGATAGTTTTGGGGAATCTGGAGTGAGAATTGTGGAACCCAAGTTTAGAATGAGCTTAGCTGAGCTATTGGATGAGAGTAAAGTTGTACCCGTATCGGTTTATGGTGATTTGGAGGTAGAGATTACAGGAATTCAACATGATTCGAGAGTGGTAAGTTCGGGGGATTTGTTTGTGTGTTGTGTTGGGAGGAAAACTGATGGCCATTTATATTTGAGTGAGGCTGATAAGAGAGGGGCTGTTGCGGTGGTGGCAAGTAAAGAAATAGATATAGAGGAGACATTGGGGTGTAAAGCTCTGGTCATTGTGGAAGATACCAGTTTGGTTCTTCCTGCATTGGCTGCAGCCTTTTATGGACACCCATCGAAAAATATGGCTGTGATTGGTATAGTTGGGACAAATGGGAAGACGACCACGGCGTATTTGATAAGGGCCATGTATGAAGCTATGGGATTGAGAACCGGGATGTTGAGCACTGTAGCATATTATGTGCATGGAAAAAATAAGTTGGAAGCGCCATACACCACCCCGGATGCTGTTTTGATTCAGAAGTTGATGGCAAAGATGCTACATAATGGTACTGAAGCTGTTGTGATGGAAGCTTCATCCCATGGGCTAGCACTAGGGAGGTGCAATGAAGTCGATTTTGATATTGCAGTTTTCACAAATTTGACTAGGGATCATATGGATTTTCATGAGTCAGAGGAGGATTATAGGAATGCCAAGGCCAAACTATTTTCCAGAATGGTGGACCCTGATCGGCACAGGAAAATTGTTAACATCGATGACCCAAACGCACCTTTCTTTATAGCACAAGGGAACCCAGATGTACCCGTTGTGACCTTTGCAATGGAGAATAAGGATGCAGATGTTCATCCATTGAAGTTTGAACTCTCCCTGTTTGAGACCCAGGTCTTGGTCCAGACACCCAAGGGAATATTGGAGATTTCATCAGGATTGCTGGGGAGGCATAATATTTACAACATTCTGGCAGCGGTTGCAGTTGGGATTGCTGTTGGGGCGCCTTTGGAGGACATTGTTAGAGGTATTGAAGAGATTGATGCAGTTCCTGGTAGATGTGAGTTAATAGATGAGGAACAGGCATTTGGGGTGATTGTGGATTATGCGCATACTCCTGATGCCCTATCTAGATTACTGGACTCCGTTAGGGAGCTTGGAGCAAGGCGGATTATTACAGTTTTTGGTTGTGCTGGTGAGAGTGATAGAGGGAAGCGGCCCATAATGACGAAGATTGCAACAGATAAAAGTGATGTGGTTATTCTGACCTCCGACAATCCAAAGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGCGTGGGATGGACAATGCACGATTACTTGAAATATGGGGCAAATGATTACTACCCGCCTCTTCCAAACGGTCATAGGCTTTTCTTGCATGATATTAGACGGGTAGCTGTTCGTGCAGCTGTTGCCATGGGCGAGGAAGGTGATATTGTTGTGGTTGCTGGAAAAGGTCATGAGACATATCAGATAGAAGGTGACAAAAAGGAGTTCTTTGATGATCGGGAGGAATGCCGTGAAGCATTGCAGTATGTTGATGAGCTTCATCAAGCTGGAATAGACACGAGTGAATTTCCATGGCGGTTACCTGAGAGTCACTAA 2325 0.4615 MALTFFSLTTPFMYPHSLCLKPSISQFKSLHGFFPLHRRLRSPAVVVSAGNFDPNPADDDPPEAPEDSAHGLFKFQQIQRQAARARKREEEQFKKDQSTFLNAIADVEDAPDNVDSIDAEGAGDDLFGEIDKAIAMKRKEFVKQGLLKPNPKKESVVPEEIAEGIEELEPDEVVDLEEINELRGLTVISEDLDDEESEKLDDEESDSGNVNGGSSSHSSFDVDFDSFGESGVRIVEPKFRMSLAELLDESKVVPVSVYGDLEVEITGIQHDSRVVSSGDLFVCCVGRKTDGHLYLSEADKRGAVAVVASKEIDIEETLGCKALVIVEDTSLVLPALAAAFYGHPSKNMAVIGIVGTNGKTTTAYLIRAMYEAMGLRTGMLSTVAYYVHGKNKLEAPYTTPDAVLIQKLMAKMLHNGTEAVVMEASSHGLALGRCNEVDFDIAVFTNLTRDHMDFHESEEDYRNAKAKLFSRMVDPDRHRKIVNIDDPNAPFFIAQGNPDVPVVTFAMENKDADVHPLKFELSLFETQVLVQTPKGILEISSGLLGRHNIYNILAAVAVGIAVGAPLEDIVRGIEEIDAVPGRCELIDEEQAFGVIVDYAHTPDALSRLLDSVRELGARRIITVFGCAGESDRGKRPIMTKIATDKSDVVILTSDNPKNEDPLDILDDMLAGVGWTMHDYLKYGANDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDIVVVAGKGHETYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0359 774 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 263 751 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vvi2g0359 774 Gene3D - 344 582 IPR036565 GO:0005524|GO:0009058
Vvi2g0359 774 SUPERFAMILY MurD-like peptide ligases, catalytic domain 344 576 IPR036565 GO:0005524|GO:0009058
Vvi2g0359 774 MobiDBLite consensus disorder prediction 187 217 - -
Vvi2g0359 774 Pfam Mur ligase family, glutamate ligase domain 579 662 IPR004101 GO:0009058|GO:0016881
Vvi2g0359 774 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 579 751 IPR036615 GO:0009058|GO:0016881
Vvi2g0359 774 Gene3D - 242 342 - -
Vvi2g0359 774 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 584 757 - -
Vvi2g0359 774 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 241 750 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vvi2g0359 774 Pfam Mur ligase middle domain 354 558 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vvi2g0359 774 Gene3D - 584 761 IPR036615 GO:0009058|GO:0016881
Vvi2g0359 774 Pfam Mur ligase family, catalytic domain 264 341 IPR000713 GO:0009058|GO:0016881
Vvi2g0359 774 PANTHER MUR LIGASE FAMILY MEMBER 193 760 - -
Vvi2g0359 774 SUPERFAMILY MurE/MurF N-terminal domain 242 344 IPR035911 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0359 - - vvi:100242838 1420.22