Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0355 ATGCAGTACGATGGGTCAACAACGGGTTATTTATTAGTTAGGGCATCCAGATCAAGTCTGGTCATTTTCATTGGAGCTTCAAGTGGCATTGGCACAGAGACATCTCGTGTTCTTGCATTGCATGGTGTACATGTCATTATGGCGGTAAGGAATGTGGATGCTGGTAGGAATGTCAAGGAGACGATACTTAAGGAAATCCCCACTGCTAAAGTTGATGTTATGGAGTTAGATCTCAGCTCACTGCCATCAGTGAGGAAATTTGCATCTGAATATAAGTCCTTGGGTCTTCCCCTGAACCTTCTCATTAACAATGCAGGGGTTATGGCCACTCCATTCCTGCTTTCCCATGACAACATAGAGCTGCAGTTTGCAACCAACCATTTAGGTCATTTTCTTTTGACCAACCTTTTGCTGGAAACCATGAAAAATACAGCACGTGAAAGTGGCAGAGAAGGAAGGATTGTAAATGTTTCATCAGAAGGTCATCGGTTTCCCTACAGTGAAGGAATTTGTTTTGACAAAATCAATGACGAGTCAGCATATAACAGTGTATACGCTTATGGACAATCAAAGCTTGCTAACATATTGCACGCTAATGAGCTTGCAAAGCGCCTGCAGGAAGAAGGGGTGGAGATAACTGCTAATTCACTTCATCCTGGAGCAATTGCCACCAATCTTCTGCGGTACCACAGCTTTCTGGATGGCATTGTTAACATGGTTGGTAAATATGTGCTTAAAAATATTCCACAGGGAGCAGCAACTACTTGCTATGTGGCCTTGCACCCTCAAGTTAAGGGGGTAAGCGGTGAGTATTTCGCGGACAGTAACATAGCCAAGCCAAGCTCCAAGGGTAAAGATGCAGAATTGGGGAAGAAACTATGGGAGTTCAGCATAAGCCTGACAGAACCCAATTAA 915 0.4383 MQYDGSTTGYLLVRASRSSLVIFIGASSGIGTETSRVLALHGVHVIMAVRNVDAGRNVKETILKEIPTAKVDVMELDLSSLPSVRKFASEYKSLGLPLNLLINNAGVMATPFLLSHDNIELQFATNHLGHFLLTNLLLETMKNTARESGREGRIVNVSSEGHRFPYSEGICFDKINDESAYNSVYAYGQSKLANILHANELAKRLQEEGVEITANSLHPGAIATNLLRYHSFLDGIVNMVGKYVLKNIPQGAATTCYVALHPQVKGVSGEYFADSNIAKPSSKGKDAELGKKLWEFSISLTEPN* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0355 304 PRINTS Glucose/ribitol dehydrogenase family signature 187 206 IPR002347 -
Vvi2g0355 304 PRINTS Glucose/ribitol dehydrogenase family signature 96 107 IPR002347 -
Vvi2g0355 304 PRINTS Glucose/ribitol dehydrogenase family signature 146 162 IPR002347 -
Vvi2g0355 304 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Vvi2g0355 304 PRINTS Glucose/ribitol dehydrogenase family signature 210 227 IPR002347 -
Vvi2g0355 304 PANTHER RETINOL DEHYDROGENASE 19 301 - -
Vvi2g0355 304 CDD retinol-DH_like_SDR_c_like 21 294 - -
Vvi2g0355 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 187 206 IPR002347 -
Vvi2g0355 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 IPR002347 -
Vvi2g0355 304 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 160 IPR002347 -
Vvi2g0355 304 Gene3D - 15 303 - -
Vvi2g0355 304 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 278 IPR036291 -
Vvi2g0355 304 Pfam short chain dehydrogenase 21 168 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0355 Vvi-Chr2 2883940 2888525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0355 17 159 Acyl Lipid Metabolism Gene Families AT1G62610 30.263 3.14e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0355 - K19329 vvi:100253030 535.798