Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0347 ATGCCACCTTATGCACCGATGATGCCTCCAAGCGGCAGAAAGGAATCCAACATCGTCACCATCGACGTTGGCGGCCAGATTTTTCAGACTACCAAACAAACCCTAACCCTAGCCGGCCCCAAATCTCTGTTCTCCAAGATTTTAGACTTGCCGGCGTCGGCCCAGATCGGATTTCCCTTCATCGACCGAGACCCGGACTTGTTTTCAATCCTTCTGTCTTTGCTTCGTACTGGTAATCTTCCGTCAAAGGCCAAAGCTGTTGATCTCCAAGACCTCTTTTCGGAAGCCAAATTCTATGGTATTGAGAGCCTTCTCGTCTCTTCTCTATCTAACCCATCTCAGTTCGACGCCTTCAATCTTGAGAAATCGCTGATTTTGCCGTTGAACGGCAGGGATTCGCCGTCGGCGATATCGACCACAATGTTCGGGTCAGTGCATGTGGCGCATGGCTCTAAGATCACGTCTTTTGATTGGTCTCTGCAGAGGAAATCCACAATTTTGACGCGGTTCTCCGCCGTCGACTCTCTCCTCGCTTTATCGCCGTCAGTGGCGGCTGCCGGGGCCACCGACTTTTCGGGTTTGCAGATTCTCGATCTCGAAAACGGGTATGTGAAAGAGACCTTGAATTGGGAAAACGTGACCAGGTCTAGTTCAACAGTTCAAGCAATTGGGTCCTCCCCTAAATTCTTGTTCACTAGTTTTGAATCGGGCAGGCGAAATTCAAATTCGATCGTTGTTTTTGACATCGAAAACTTGAAGCCGGTTTCTGAAATTGGTACTAATGAAATTTATGGTGCTGATCTCGATTCAGGCATTCCCGCAACGAAATTGAGTTGGATTTCGGATTATAATCTGTTAATGGCCTCTGGATCTCATAGTGGGCCTTCAGGAGTATGCGGCAACATCAAATTATGGGATGTGAGGTCTGGAAATTTAGTATGGGAATTGAAGGAGAAAGTAGATTGCTTTTCAGATGTCACGGTTTCGGAAAACTTGTCTGCAATTTTCAAAGTTGGTGTGAATTCAGGGGAGGTGTTCCTCATGGATTTAAGAAATCTTGGTGCTATGAATACATGGGTTCCCACCGGGGAGACGAGAAGGGTGGTTAATGGGAAAAAAGAAGGTGTCGGGTGTAAGATTGGAAGCCATGGGAATCAAGTTTTTTGTAGTAAGGGAGGGAATTTGGAGTTATGGTCTGAGGTTTTCATGGGTTCTACGATAAAGAGTGAAGATGGGTTGCAGGAGAGGGTATATAGGAGGAATTTGATGGGTAGAGCAAAGGACATGGGAGGATCAAGGATAACCCACTTGAGCTTTGGGGGGAACAAAATGTTTGTGACAAGGAAAGACCAGCAGTCTGTCGAGGTTTGGCAGAGTTCAGTAAGGGGATTTTGA 1395 0.4674 MPPYAPMMPPSGRKESNIVTIDVGGQIFQTTKQTLTLAGPKSLFSKILDLPASAQIGFPFIDRDPDLFSILLSLLRTGNLPSKAKAVDLQDLFSEAKFYGIESLLVSSLSNPSQFDAFNLEKSLILPLNGRDSPSAISTTMFGSVHVAHGSKITSFDWSLQRKSTILTRFSAVDSLLALSPSVAAAGATDFSGLQILDLENGYVKETLNWENVTRSSSTVQAIGSSPKFLFTSFESGRRNSNSIVVFDIENLKPVSEIGTNEIYGADLDSGIPATKLSWISDYNLLMASGSHSGPSGVCGNIKLWDVRSGNLVWELKEKVDCFSDVTVSENLSAIFKVGVNSGEVFLMDLRNLGAMNTWVPTGETRRVVNGKKEGVGCKIGSHGNQVFCSKGGNLELWSEVFMGSTIKSEDGLQERVYRRNLMGRAKDMGGSRITHLSFGGNKMFVTRKDQQSVEVWQSSVRGF* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0347 464 SUPERFAMILY WD40 repeat-like 148 457 IPR036322 GO:0005515
Vvi2g0347 464 Gene3D Potassium Channel Kv1.1; Chain A 10 117 IPR011333 -
Vvi2g0347 464 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 14 460 IPR045068 -
Vvi2g0347 464 Pfam BTB/POZ domain 19 107 IPR003131 GO:0051260
Vvi2g0347 464 SMART BTB_4 17 116 IPR000210 GO:0005515
Vvi2g0347 464 SUPERFAMILY POZ domain 18 107 IPR011333 -
Vvi2g0347 464 Gene3D - 135 462 IPR015943 GO:0005515
Vvi2g0347 464 CDD BTB_POZ_KCTD-like 19 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0347 Vvi-Chr2 2814497 2815891 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0347 - - vvi:100854918 904.82