Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0300 ATGGCAGCAATGTGGAAATTGCCCATTATGTTTGTGGTGGAGAACAATTTGTGGGCAATTGGGATGTTGCATTTGAGAGCAACTTCTGAACTTGAGATATGGAAGAAAGGGTCAGCATCTGCAATGCCTGGAGTGTATGTGGATGGTATGGATGTTTTGAAGTGGAGAAGGCTCGCTATGCTGCTAGAGATCCCCTCAAAGCCTTGA 207 0.4541 MAAMWKLPIMFVVENNLWAIGMLHLRATSELEIWKKGSASAMPGVYVDGMDVLKWRRLAMLLEIPSKP* 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0300 68 Pfam Dehydrogenase E1 component 1 53 IPR001017 GO:0016624
Vvi2g0300 68 Gene3D - 1 61 - -
Vvi2g0300 68 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 1 59 - -
Vvi2g0300 68 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 55 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0300 Vvi-Chr2 2434116 2434591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0300 1 59 Acyl Lipid Metabolism Gene Families AT1G01090 77.966 5.41e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0300 K00161 - mus:103972144 99.7525