Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0297 ATGGCGACTCTGACTGCTTCTCACTTCGTATCAAGAACATCGCATGTCAACGGCACCCAGGAAAGCTCGGGCTCGGAGACGAAGTCGTTGGCGCAGATTGGGCTGAGGGGCCAGCGCGCCACGCACAATGGCTTGAGGCGGTTGAGTGCGAGGACAACTGTGGGGAGGAGCAAGGGGTATAAGTCTGAGAATGGCAAGGGTTTGCCTTCCGGAGCTATTGTATGTCGAAGTGGGATGAACTTGGTGTTTGTGGGATGCGAGGTTGGTCCCTGGAGCAAAACCGGTGGTCTTGGTGATGTTCTCGGTGGTCTGCCGCCGGCCATGGCGGCTCGTGGGCACAGGGTTATGTCTGTGAGTCCACGCTATGACCAGTACAAAGATGCATGGGATACCTGTGTGGTTGTTGAGATTCCAGTTGGGGACAGAATTGAAACTGTTCGCTTTTTCCACTGCTACAAAAGAGGAGTTGATCGTGTCTTCGTGGATCATCCCTGGTTCCTTGAGAAGGTATGGGGAAAAACTGGATCCAAAATTTATGGCCCTAGCGCAGGAGTAGACTACATCGACAATCAAATGCGATTCAGCTTGTTTTGCCAGGCTGTTCTGGAGGCACCACGGATTCTGAATCTAAACAGCAGCAAATATTTCTCAGGACCATATGGAGAGGATGTTGTCTTCATTGCTAATGACTGGCACACTGCTATTCTTCCATGCTACCTCAAATCAATGTACCAATCTAGTGGAATTTACAGAAATGCCAAGGTAGTGTTTTGCATCCACAACATTGCCTACCAAGGAAGATTTGCCTTTTCTGATTTCGGATTCCTCAATCTGCCAGATAGATTCAAGAGCTCTTTTGATTTTATGGATGGGTATAAAAAGCCTGTGAAAGGAAGGAAAATCAACTGGATGAAGGCTGGAATACTAGAAGCAGACAGAGTTGTAACTGTGAGCCCATACTACGCCGAGGAACTTGTTTCTGGTGAAGCCAAAGGTGTGGAATTGGACAACATCATTCGGAAGGCTACCATTACTGGAATTGTGAATGGTATGGATGTCCAGGAGTGGAATCCATCCACAGACAAACACATTGGCATTCATTACAATGCCACAACTGTGATGGATGCAAAAGCTCTACTGAAGGAAGCTCTTCAGGCAGAAGTTGGGTTGCCCGTGGACAGGAATATCCCACTGATAGGCTTTATTGGTAGACTAGAAGAGCAGAAAGGTTCAGATATTCTAGCAGCAGCCATTCCAAAATTCATTGATGAGGATGTTCAGATTGTTGTCCTTGGAACTGGCAAAAAGGCCATGGAGAAACAGATCGAACAGCTGGAGATTAAATATCCTAACAAGGCCATAGGAGTAGCGAAATTTAATGTTTCATTGGCCCATATGATCACTGCTGGGGCTGATTTCATGTTGATCCCAAGTAGATTTGAACCATGTGGTCTCATTCAGTTGCATGCTATGAGATATGGAACGGTGCCTATTTGTGCCGCAACTGGTGGGCTTGTCGACACTGTTAAAGAGGGTTTTACAGGATTCCATATGGGACCCTTCAATGTTGAATGTGATAGGATTGACCCAGCTGATGTAGATGCAGTAGCAATAACCGTAAAGAGAGCTCTTGCTACTTATGGCACTGCTGCTTTGGGAGAGATGATACAAAACTGCATGGCCCTAGATCTTTCCTGGAAGGGACCATCCAAGAACTGGGAAGAGCTGCTACTCAGCCTGGGGCCTGCTGGTTGCCAACCTGGTATAGAAGGGGAGGAGATTGCGCCTCTCGCCAAGGAAAATGTTGCCACTCCTTGA 1818 0.4747 MATLTASHFVSRTSHVNGTQESSGSETKSLAQIGLRGQRATHNGLRRLSARTTVGRSKGYKSENGKGLPSGAIVCRSGMNLVFVGCEVGPWSKTGGLGDVLGGLPPAMAARGHRVMSVSPRYDQYKDAWDTCVVVEIPVGDRIETVRFFHCYKRGVDRVFVDHPWFLEKVWGKTGSKIYGPSAGVDYIDNQMRFSLFCQAVLEAPRILNLNSSKYFSGPYGEDVVFIANDWHTAILPCYLKSMYQSSGIYRNAKVVFCIHNIAYQGRFAFSDFGFLNLPDRFKSSFDFMDGYKKPVKGRKINWMKAGILEADRVVTVSPYYAEELVSGEAKGVELDNIIRKATITGIVNGMDVQEWNPSTDKHIGIHYNATTVMDAKALLKEALQAEVGLPVDRNIPLIGFIGRLEEQKGSDILAAAIPKFIDEDVQIVVLGTGKKAMEKQIEQLEIKYPNKAIGVAKFNVSLAHMITAGADFMLIPSRFEPCGLIQLHAMRYGTVPICAATGGLVDTVKEGFTGFHMGPFNVECDRIDPADVDAVAITVKRALATYGTAALGEMIQNCMALDLSWKGPSKNWEELLLSLGPAGCQPGIEGEEIAPLAKENVATP* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0297 605 NCBIfam glycogen/starch synthase, ADP-glucose type 79 578 IPR011835 GO:0004373
Vvi2g0297 605 MobiDBLite consensus disorder prediction 1 36 - -
Vvi2g0297 605 Hamap Glycogen synthase [glgA]. 79 580 IPR011835 GO:0004373
Vvi2g0297 605 Pfam Starch synthase catalytic domain 81 341 IPR013534 -
Vvi2g0297 605 FunFam Starch synthase, chloroplastic/amyloplastic 80 356 - -
Vvi2g0297 605 Gene3D Glycogen Phosphorylase B; 352 562 - -
Vvi2g0297 605 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 57 580 - -
Vvi2g0297 605 FunFam Starch synthase, chloroplastic/amyloplastic 357 562 - -
Vvi2g0297 605 Gene3D Glycogen Phosphorylase B; 81 569 - -
Vvi2g0297 605 Pfam Glycosyl transferases group 1 396 523 IPR001296 GO:0016757
Vvi2g0297 605 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 73 580 - -
Vvi2g0297 605 CDD GT5_Glycogen_synthase_DULL1-like 80 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0297 Vvi-Chr2 2418452 2421979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0297 1 605 Glycosyltransferase AT1G32900 71.452 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0297 K13679 - vvi:100264969 1217.99