Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0294 ATGACTATTGCTGATTCGGGTTTTATGATGGAAAATGGAGGAAGTTGCTTACCTTACACACCGGAGCAAGAGAAACAGATTGTTGATGATTTGATGAATAAATCAGAGTCCAGTTTGAAAGAAGGCAACTTGTACTACGTTGTTTCCAATAGATGGTTTACAAGTTGGCAGAGATACATTGGACAGGGCAATGGTGAATATCCAATTAATGGGCATTTGTCTGATTCACAGCGTTTGGATGCGGTTCCATCAAAGACAGCAGAGAGACCTGGACCTATTGATAATTCTGATATTGTTTTAAATGGAAATGAATGTGAACTTGATGATCTGGAGATTCTTAGAACGCTAGAGGAGGGACGTGATTATGTTTTAGTTCCTCAAGAAGTTTGGGAGAAGCTTTTTGACTGGTATAAAGGAGGACCGGCATTACCCAGAAAGATGATTTCTCAAGGTATTACTCACAAGAAATTCATGGTGGAGATTTACCGACTATGCCTTAAGTTAACTGATTCCAGAGACAACAGTCAATCAGTTATAAGGTTGAGTAAAAAGGCTTCTGTGCATGAGCTTTATGAGAGGGTGTGTACACTTAAAGTGGTAGAGCAGGAAAAGGCCCGCATATGGGACTATTTCAATAAGCGGAAACAAGCAATATTAGTTGCTTCAAACCAAACTCTTGAGGAATCTAACTTGCAGATGGACCAAGATATTCTTTTGGAGGTGCAACTTGATGGATATTGGCCCTCTGGATTTGGCATGGATTCAACCGGAAATGAACTGGCTTTGGTACCAATGGAACCTCCAAGATCCTCTGTATCAATTGCAGGAGGCCCAACCCTCTCAAATGGTTATTCCAAAGTTCATACCTCCAATTTGTATCAGGGAAGTCCTTTAGGTTCAACATTTACAGATATGGAGGATGGATATGATGTTTTGAGGAGTGTAGCAAAAGGAGATAGGGGAGGTTTGGCAGGATTGCAGAATCTAGGAAACACTTGCTTTATGAACAGTGCTATTCAGTGTTTAGTACATACACCCCCCATATTTGAGTATTTCTTGCAAGACTACACCGAGGAGATCAACAAACAAAATCCATTAGGAATGAATGGTGAGCTTGCATTTGCTTTTGGTGAATTGTTGAGGAAATTATGGTCCTCTGGCCGGACACCAGTTGCACCTCGTGCATTTAAGGGAAAACTTGCTCGATTTGCTCCTCAGTTCAGTGGGTATAATCAGCACGATTCTCAAGAACTTCTTGCTTTCTTACTGGATGGACTGCATGAAGATTTGAATCGTGTAAAACAAAAGCCATATATTGAAACAAAGGATTCAAATGGTCGCCCAGATGAGGAAGTTGCTGACGAGTGTTGGAGGAATCATAAAGCTCGGAATGATTCATTAATTGTGGATGTTTGCCAGGGTCAATATAAGTCAACTCTGGTTTGCCCAGTTTGCAGCAAAATTTCAATAACATTTGATCCGTTCATGTATTTGTCATTGCCGCTGCCTTCAACGGTCACTCGGATAATGACGGTGACTGTGTTCTATGGTGATGGAAGTGGCCTTCCAATGCCCTACACTGTGACAGTGCTAAAACATGGTTACTGTAAAGATCTTAGCCAGGCATTGGCTGCTGCATGCTGCTTGAAGAGTGATGAAAATCTACTGCTTGCTGAGGTCTACGAACATCGGATATATCGATACATAGAGAATCCTTCGGAGTTATTGACTAATATAAAGGATGAGGAACATATTGTGGCTTACCGTCTTCCTAAGAAACGAGCAGGATTAACAAGACTGGAGATAATTCATAGGTGTCAGCAACAATGTACACCAGACAGTCTGAAGGGTGGTGAGAGGAAGCTTTTGGGAGCACCACTAGTTACTTATTTAGGAGAGGATGCTCAAACTGGAGCTGATATTGACATTGCCGTTTCTAGATTGCTCTCTCCATTGAGAAGGAAAACATATCCCTCTTCGTCTAATGTTCATAGTGGCAAGGAAAATGGCTCCGTTTCAGAAGCTACTGATAATCCTACAAACAGCTGCAATACTCAATCTGGATCTGGGAACCAGTCGACAGATGGCACAGAACTAGAAGAAATGTCCAGATGGGAGTTGTCCTTCCAGCTTTCCATTACTGATGAAAGGGGTTTGAGCTGCAAGCCTATTGAAAAGGATTCTCTCATAAGACCTGGTCAATTTATACGGGTTATGTTGGACTGGACTGACAAAGAACATGAATTATATGATGCCAGCTACCTCAGGGATCTTCCTGAGGTTCATAAGAATGGGTTCACCGCAAAGAAGACCAGGCCAGAAGCTATCACCCTGTTTTCATGCTTGGAGGCATTCCTGAAAGAAGAACCTCTAGGACCTCAAGACATGTGGTATTGCCCTAATTGCAAGGAACATAGACAAGCCACCAAGAAATTGGACTTGTGGAGGTTGCCAGATATTCTTGTGTTTCACTTGAAACGATTTTCATACAGCCGATACCTGAAGAACAAACTTGATACCCTTGTAAATTTTCCCATTCATAGTCTTGACTTGAGCCAATATGTGAAATGCAAGGATGCATCTTCACAATCTCATGTTTATGAGCTATATGCCATCAGCAACCATTATGGTGGCCTAGGCGGTGGGCACTACTCTGCCTATGCAAAGTTGATTGATGAAAACAGATGGTACCATTTCGATGACAGCCATGTTTCTCCCGTTGGCGAGAGCGAGATCAAGACATCAGCTGCATATGTGTTATTCTATCAACGAGTTAAAGCAGCTCCAAAGATTGGAACAGGGGAGCCTTCTCTGGGTCATACAAGTTCTTGA 2832 0.4213 MTIADSGFMMENGGSCLPYTPEQEKQIVDDLMNKSESSLKEGNLYYVVSNRWFTSWQRYIGQGNGEYPINGHLSDSQRLDAVPSKTAERPGPIDNSDIVLNGNECELDDLEILRTLEEGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLTDSRDNSQSVIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNKRKQAILVASNQTLEESNLQMDQDILLEVQLDGYWPSGFGMDSTGNELALVPMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQGSPLGSTFTDMEDGYDVLRSVAKGDRGGLAGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQDYTEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHKARNDSLIVDVCQGQYKSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSGLPMPYTVTVLKHGYCKDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKDEEHIVAYRLPKKRAGLTRLEIIHRCQQQCTPDSLKGGERKLLGAPLVTYLGEDAQTGADIDIAVSRLLSPLRRKTYPSSSNVHSGKENGSVSEATDNPTNSCNTQSGSGNQSTDGTELEEMSRWELSFQLSITDERGLSCKPIEKDSLIRPGQFIRVMLDWTDKEHELYDASYLRDLPEVHKNGFTAKKTRPEAITLFSCLEAFLKEEPLGPQDMWYCPNCKEHRQATKKLDLWRLPDILVFHLKRFSYSRYLKNKLDTLVNFPIHSLDLSQYVKCKDASSQSHVYELYAISNHYGGLGGGHYSAYAKLIDENRWYHFDDSHVSPVGESEIKTSAAYVLFYQRVKAAPKIGTGEPSLGHTSS* 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0294 943 MobiDBLite consensus disorder prediction 655 700 - -
Vvi2g0294 943 Gene3D Cysteine proteinases 310 543 - -
Vvi2g0294 943 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 324 925 IPR028889 -
Vvi2g0294 943 MobiDBLite consensus disorder prediction 655 698 - -
Vvi2g0294 943 SUPERFAMILY DUSP-like 16 148 IPR035927 -
Vvi2g0294 943 Pfam DUSP domain 43 148 IPR006615 GO:0004843
Vvi2g0294 943 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 266 924 - -
Vvi2g0294 943 SMART dusp 38 151 IPR006615 GO:0004843
Vvi2g0294 943 ProSiteProfiles DUSP domain profile. 19 148 IPR006615 GO:0004843
Vvi2g0294 943 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 867 884 IPR018200 GO:0004843|GO:0006511
Vvi2g0294 943 Gene3D Cysteine proteinases 648 930 - -
Vvi2g0294 943 CDD Peptidase_C19R 768 923 - -
Vvi2g0294 943 SUPERFAMILY Cysteine proteinases 322 925 IPR038765 -
Vvi2g0294 943 Gene3D - 162 250 - -
Vvi2g0294 943 Pfam Ubiquitin carboxyl-terminal hydrolase 325 922 IPR001394 GO:0004843|GO:0016579
Vvi2g0294 943 Gene3D - 8 161 IPR035927 -
Vvi2g0294 943 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 325 340 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0294 Vvi-Chr2 2399307 2409477 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0294 774 927 Miscellaneous Gene Families AT4G31670 36.306 1.00e-19 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0294 - - vvi:100259769 1930.99