Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0277 ATGGAGGCTAAAATCTTAGTGTTCATCATACTCCAGCTGGAGCTTTTTTTATTCTCCAATTTGGTGTTGGGTGCCCATTCCAATGGTGGAAGCTGGGAGTTGCTGAAGAAAAGTATTGGGATTTCATCAATGCACATACAATTGTTACAGAATGAGCGAATAATTACTTTTGATAGAACCGATGCCGGTCCTTCCAACCTTACCTTACCAAAGGGAAGGAAATGTCCTAAAATTTCAGGAAGAAGGGATTGCTACGTGCATGCAGTGGAACTGGATATGATGAACAACCTCAATGTTAGACCACTCACTGTGCTGTCTGATACATGGTGTTCTTCCGGCTCATTGTTGCCGGACGGCAAGTTAGTGCAGAGTGGAGGCTATGGGAATGGTGAGAAGGTTGTTCGAACCCTCGAGCCATGCCCAACCTGCGACTGGAAGGAAGATTATAAGGGTCTGATTTCTCCGAGATGGTATGCTTCAAATCAAGTTTTGCCTGGTGGGAATATCATTGTGGTGGGGGGGAGGTTTCAATTCTCATATGAGTTCATCCCTAAAAGCTCTAAACCTGAAGATCATAGACTTTACACCCTTCCATTTCTCAAAGAAACCAGGTATTCATCCCAGATACCCAACAATCTCTACCCATTCACTCACCTCTCAACTGATGGAAATCTCTTTATTTTTGCAAACAACCGGGGGATTCTACTTGACTATGTGAAAAACAAAGTGGTCAAGACTTATCCCACCATGCCTGGAGAAGTTGCTCGGAATTATCCAAGCACTGGTTCCTCAGTTCTTCTTCCCCTCGACCTCTCCACCAAAACCACCCCGGAAGCCGAGGTTTTCATCTGCGGTGGAACGCATCCTGAGTCGTTTAATAAGGCCAAGGCTGGAATATTTCTTGAAGCAACCAAAACTTGCGGCAGACTGAGAATCACAGCCGCGAACCCCAAGTGGGAAATGGAGGAAATGCCCATCAGTCGAGTATTGGGAGACATGATCATGTTGCCAACAGGAGATGTCTTGATCATAAATGGTGCGGCAAATGGAAGCGCTGGTTGGTGGTATGCGAGAGTACCTGTTTACAACCCAGTAATTTATAGGCCAGCAGAAGCAGCTACAGCCAACAGGTTTGAGGTTTTGAAGGCTGCTACGATACCCCGTCTCTATCATTCAACTGCTCATTTGCTTTCAGATGGACGTGTCCTGGTCGCCGGCAGCAACCCCAACCATAATTACAACTTCACAGTACCTTTTCCAACTGAACTGAGTGTTGAAGCCTTTTCTCCACCGTACCTCACTTCAGGGAAGCCCCGGCCCTCCATTTCTTCAGTAAAGCCCGGGATGAACCTTGCTTATAAACAGAAGTTTTCAGTGGAATTTCAAGTGAAGGTGAGACAACTAGGAAAGTTTTACCTAACAATGGTGGCTCCATCTTTTACCACACATTCCTTCTCCATGAACCAGAGACTGTTGCTTTTAGCAGTAAATCGAGTTCGTAGGATGTCTTCTGGAAGCTATGCAGTTGAGGGTGACGCTCCAGCCTCAGCGGCAGTTGCTCCTCCAGGCTACTACCAATTATTTGTAGTCTATGAAGGCGTTCCTAGCGTAGGAAAGTGGGTACATATCAAATAA 1635 0.4593 MEAKILVFIILQLELFLFSNLVLGAHSNGGSWELLKKSIGISSMHIQLLQNERIITFDRTDAGPSNLTLPKGRKCPKISGRRDCYVHAVELDMMNNLNVRPLTVLSDTWCSSGSLLPDGKLVQSGGYGNGEKVVRTLEPCPTCDWKEDYKGLISPRWYASNQVLPGGNIIVVGGRFQFSYEFIPKSSKPEDHRLYTLPFLKETRYSSQIPNNLYPFTHLSTDGNLFIFANNRGILLDYVKNKVVKTYPTMPGEVARNYPSTGSSVLLPLDLSTKTTPEAEVFICGGTHPESFNKAKAGIFLEATKTCGRLRITAANPKWEMEEMPISRVLGDMIMLPTGDVLIINGAANGSAGWWYARVPVYNPVIYRPAEAATANRFEVLKAATIPRLYHSTAHLLSDGRVLVAGSNPNHNYNFTVPFPTELSVEAFSPPYLTSGKPRPSISSVKPGMNLAYKQKFSVEFQVKVRQLGKFYLTMVAPSFTTHSFSMNQRLLLLAVNRVRRMSSGSYAVEGDAPASAAVAPPGYYQLFVVYEGVPSVGKWVHIK* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0277 544 Gene3D Immunoglobulins 439 544 IPR013783 -
Vvi2g0277 544 CDD E_set_GO_C 435 543 IPR015202 -
Vvi2g0277 544 SUPERFAMILY Galactose oxidase, central domain 97 434 IPR011043 -
Vvi2g0277 544 Gene3D - 26 438 IPR037293 -
Vvi2g0277 544 PANTHER SECRETED PROTEIN-RELATED 27 543 - -
Vvi2g0277 544 Pfam Glyoxal oxidase N-terminus 44 286 IPR009880 -
Vvi2g0277 544 SUPERFAMILY E set domains 436 543 IPR014756 -
Vvi2g0277 544 Pfam Galactose oxidase-like, Early set domain 439 543 IPR015202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0277 Vvi-Chr2 2265423 2267057 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0277 - - vvi:100259927 1097.42