Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0270 ATGCTCACACAACAGAAACCCTTTATGAGAGCCCTCCGGCGAAGTATCACTTCTTCACCGTCATCATCGTCAAATTCTTCTTCACCGTCATCCTCGTCATCGTCATCGTGGATTCATTTGCGAACGGTTCTCTTAGTCGTTGCTTCCTCCTCACCAGTCTCCACTGATAGAGGCACTCTTAAATCACCATGGTCTCGCCGGAGAAGAAAACATGCCCTCCTGGCCAAACAATGGAAGAGTCTTTTTACGCCAGATGGAAAATTCACTGATGGTGGAGTTAAGTTTCTGAAGAAAGTTAGAAGCGGAGGTGTTGATCCAAGTATTAGAGTGGAGGTTTGGCCATTCCTCCTTGGAGTCTATGATGTGAAGAGTTCCAGGGAAGAGAGAGATTCTATTAGGGCTCAGAAGAGAAAGGAATATGAGAACCTGCGGAAACAGTGCCGACGAATCCTAAAACAGAGTGACACTAGCATTAAGTTGAGGGAAACTACTGGAAGCTGTAGCAACCAGGATAGTGAGGAATTCAGTCAAGTTTTAGATTCTTCTGGCTCAGAAGATGTGGTTAGTGCCAGGTTGTCTCATTCCACCGAGGGAGGGACTCCAGAGGAAGAGGATTCAGTCCACCCAGTCTGCAATGTAGGCCCTCAAACTTCAGACTCATTATTGGAAGGGGATGGTGAAAAGAGTGGACTTACCTGTGAAGATGCCTCTGCTAGTTACTCGGACTCATCTGATTCTGACTCCTCTGGAGAAATTGACAGCATACCTCTCTTTGCTGCTGAAGGAACTGAAGAAAATGATCTTGGTGATCATGCTAAGGAGAATTCCTCTCCGTCTGAGACAGAAAGTGGCTCCAAACTCCGCATGAATGAAGATTTTGCAACATGGCAGAGGATCATCCGCCTTGATGCTGTGCGAGCGAATGCTGAATGGATCATTTATTCACCATCTCAGGCTGCTGTGTCAGAGATCAAGGCACGGAGATTTGCAGAGAGTGTTGGATTGAAGGATTATGATCACCTGGAGCCATGCAGGATTTTCCATGCTGCTCGCTTAGTTGCCATTCTAGAAGCCTATGCACTCTATGATTCAGAAATTGGTTACTGCCAAGGGATGAGTGATTTACTCTCCCCGATAATTTCGGTGATGGAGGAGGACCATGATGCCTTCTGGTGCTTTGTAGGTTATATGAAGAAAGCTCGGCATAACTTCCGGCTTGATGAGGTGGGGATTCGAAGACAACTGAGCATCGTGTCCAAGATTATTAAGTGCAAGGATTCTCATCTCTATAGGCACCTGGAGAAGCTTCAGGCAGAGGATTGCTTTTTCGTATACAGAATGGTGGTTGTTCTCTTTAGGAGGGAGTTAAGCTTTGAGCAGACGCTTTGCCTCTGGGAGGTGATGTGGGCAGATCAGGCTGCAGTCAGGGCCGGGATTGCCAAGTCTACTTGGGGAAGAATAAGGCTAAGAGCCCCGCCCACTGACGACCTGCTCCTTTATGCAATAGCCGCCTGTGTGCTGCAAAGAAGGAAGCTGATCATAGAGAAGTACAGCAGTATGGATGAGATCATAAGGGAGTGCAACAGCATGGCAGGACATCTCGATGTTTGGAAGCTTCTAGATGATGCCCATGATTTGGTGGTGACCCTCCATGACAAAGTTTAG 1665 0.4721 MLTQQKPFMRALRRSITSSPSSSSNSSSPSSSSSSSWIHLRTVLLVVASSSPVSTDRGTLKSPWSRRRRKHALLAKQWKSLFTPDGKFTDGGVKFLKKVRSGGVDPSIRVEVWPFLLGVYDVKSSREERDSIRAQKRKEYENLRKQCRRILKQSDTSIKLRETTGSCSNQDSEEFSQVLDSSGSEDVVSARLSHSTEGGTPEEEDSVHPVCNVGPQTSDSLLEGDGEKSGLTCEDASASYSDSSDSDSSGEIDSIPLFAAEGTEENDLGDHAKENSSPSETESGSKLRMNEDFATWQRIIRLDAVRANAEWIIYSPSQAAVSEIKARRFAESVGLKDYDHLEPCRIFHAARLVAILEAYALYDSEIGYCQGMSDLLSPIISVMEEDHDAFWCFVGYMKKARHNFRLDEVGIRRQLSIVSKIIKCKDSHLYRHLEKLQAEDCFFVYRMVVVLFRRELSFEQTLCLWEVMWADQAAVRAGIAKSTWGRIRLRAPPTDDLLLYAIAACVLQRRKLIIEKYSSMDEIIRECNSMAGHLDVWKLLDDAHDLVVTLHDKV* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0270 554 Pfam Rab-GTPase-TBC domain 351 471 IPR000195 -
Vvi2g0270 554 MobiDBLite consensus disorder prediction 161 253 - -
Vvi2g0270 554 Coils Coil 133 153 - -
Vvi2g0270 554 ProSiteProfiles TBC/rab GAP domain profile. 103 472 IPR000195 -
Vvi2g0270 554 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 409 546 IPR035969 -
Vvi2g0270 554 Gene3D - 408 553 - -
Vvi2g0270 554 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 62 527 - -
Vvi2g0270 554 MobiDBLite consensus disorder prediction 1 34 - -
Vvi2g0270 554 SMART tbc_4 100 493 IPR000195 -
Vvi2g0270 554 MobiDBLite consensus disorder prediction 266 288 - -
Vvi2g0270 554 MobiDBLite consensus disorder prediction 234 251 - -
Vvi2g0270 554 FunFam GTPase-activating protein gyp7 isoform X1 408 553 - -
Vvi2g0270 554 MobiDBLite consensus disorder prediction 161 196 - -
Vvi2g0270 554 FunFam Ypt/Rab-GAP domain of gyp1p superfamily protein 274 404 - -
Vvi2g0270 554 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 78 432 IPR035969 -
Vvi2g0270 554 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 271 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0270 Vvi-Chr2 2196331 2200491 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0270 - - vvi:100265048 1049.27