Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0251 ATGGTTGATGTAGCCGACAAATTAGCTTATTTTCAAGCTATCACAGGCCTTGAAGATCCCGATTTGTGTTCTGAGATCCTTGCTGCCCATGGCTGGGACCTAGAACTCGCTATCTCCTCTTTCACTGTCACCAATTCCGACCGTCCGGAGAGTTCCGCGACGGTCGCTGCCGATGTTGCAGAGGTAGGAAGAAGCGAACAGTCTAGTGAAGAATTGCGCTTGCTTCAGATATCGGAGACAATGGGCGGGGTTGTTGCTCCGCCTGGTTTGGCGTGGAAACTCATCACGTTACCGATTTCTGTGATTTCCGGTAGTTTAGGGTTAATTTCTGGTGCGATTGGGCTGGGAATGTGGGCGGCGGGAGGTGTGTTATCGTATTCGTTGAGTATGATCGGGTTGGGCTCTGGTTCGGGGAGGAATGGTGACTCGTCGTCGCCGTTGGTTTCTGTGTCAGCAGCGGGCGCGGAGGCGATGGATTTTGTGGCGAGTTTCGAGAAGGATTATGGTGCGACTCGGCCGAATTTTGTGACCGAGGGGTTTATGGATGGGCTGCAACTCTCTCGGAACGCTTTTAAGCTGTTGTTTGTATACTTGCACTCGCCGGATCATCCTGATACGCCTTTGTTTTGTGAGAGGACTCTTTGTTCTGAGCCCTTGGCGGCTTTTATTAATGAAAATTTTGTGTCGTGGGGAGGGAATATCCGGGCCAGCGAGGGGTTCAAGATGAGTAACAGCTTGAAGGCTTCTCGGTTTCCATTTTGTGCGGTGGTAATGGCTGCCACGAATCAGAGGATTGCTCTGCTTCAGCAGGTTGAGGGACCAAAATCTCCTGAAGAAATGCTCACAATTCTGCAGAAAGTGCTTGAAGAAAGTGCCCCTGTTCTTGTTGCAGCAAGGCTTGATGCGGAAGAAAGAAGAAACAGCACAAGATTGAGGGAGGAACAAGATGCTGCTTATCGTGAAGCACTTGAAGCTGACCAAGCTAGGGAACGCCAGAGGAAAGAAGAACAAGAACGGCTGGAAAGAGAAGCTGCTGAAGCTGAGAGGAAGCGCAAGGAGGAAGAAGAGGCTCGTGAAAGAGCAGCACGTGAAGCCGCTGAGAAAGAAGCCGCACTAGCTAGAATGCGGCAGGAGAAAGCTCTGTCACTTGGCAGTGAACCTGAAAAAGGACCTAATGTCACTCAGGTATTGGTACGATTTCCCACCGGAGAACGCAAGGACAGAAGGTTCCATAGTACAGCAACAATCCAATCTCTATACGACTATGTTGATTCGTTGGGTTGCTTGGATGCCGAAAGCTACAGCCTTGTCTCTAACTTCCCCAGAGTGGTATATGGCCCAGAGAAGCTCTCACTGTCGTTGAAAGAAGCTGGATTGCATCCACAGGCCAGCCTTTTTGTGGAGCCGAACTGA 1413 0.5046 MVDVADKLAYFQAITGLEDPDLCSEILAAHGWDLELAISSFTVTNSDRPESSATVAADVAEVGRSEQSSEELRLLQISETMGGVVAPPGLAWKLITLPISVISGSLGLISGAIGLGMWAAGGVLSYSLSMIGLGSGSGRNGDSSSPLVSVSAAGAEAMDFVASFEKDYGATRPNFVTEGFMDGLQLSRNAFKLLFVYLHSPDHPDTPLFCERTLCSEPLAAFINENFVSWGGNIRASEGFKMSNSLKASRFPFCAVVMAATNQRIALLQQVEGPKSPEEMLTILQKVLEESAPVLVAARLDAEERRNSTRLREEQDAAYREALEADQARERQRKEEQERLEREAAEAERKRKEEEEARERAAREAAEKEAALARMRQEKALSLGSEPEKGPNVTQVLVRFPTGERKDRRFHSTATIQSLYDYVDSLGCLDAESYSLVSNFPRVVYGPEKLSLSLKEAGLHPQASLFVEPN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0251 470 CDD UBX 396 468 - -
Vvi2g0251 470 Coils Coil 320 378 - -
Vvi2g0251 470 PANTHER FAS-ASSOCIATED PROTEIN 10 468 - -
Vvi2g0251 470 Gene3D - 2 52 - -
Vvi2g0251 470 SMART ubx_3 387 469 IPR001012 GO:0005515
Vvi2g0251 470 SUPERFAMILY Ubiquitin-like 352 469 IPR029071 -
Vvi2g0251 470 Gene3D Glutaredoxin 144 295 - -
Vvi2g0251 470 ProSiteProfiles UBX domain profile. 389 467 IPR001012 GO:0005515
Vvi2g0251 470 Gene3D - 392 470 - -
Vvi2g0251 470 MobiDBLite consensus disorder prediction 324 374 - -
Vvi2g0251 470 CDD UBA_FAF 11 42 - -
Vvi2g0251 470 SUPERFAMILY Thioredoxin-like 155 299 IPR036249 -
Vvi2g0251 470 SMART 45neu3 159 285 IPR006577 -
Vvi2g0251 470 Pfam UBA-like domain 6 44 - -
Vvi2g0251 470 CDD UAS 175 290 - -
Vvi2g0251 470 Pfam UBX domain 389 469 IPR001012 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0251 Vvi-Chr2 2079470 2090561 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0251 K18726 - vvi:100263375 791.571