Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0228 ATGGCGATCGCTTCTCCCTCTGTTCCAACCTTCTTTGCCTCCTTCTGCTGCACCGGGGCCGAGTGCACTCGCTTCTTCCTCCGATCGCCATCCCTCGTCGGCAATCGATCCCACCGGACACGTCGGTGTCGGCTCACTATCTCATCGGGTCTCAACTCATCGAAGCCGTCCGACGCCGGAGGGCATGTGTCCCCAAACAACGGGGATTTCCAGTACGAGCTCCAGCATGGGTTCTCGGCGCAGCGGAGTAAGGGGTCGCCGGTGTTTGTGACACTGCCGGTGGACGTCGTGAGCTCTTCGGGGGAGGTGCGGCGGTGGAAGACGATGGTGCAGTCGTTCCGGGCAATCGCAGCGGCGGGGGTTGAGGGGGTGGTTATGGAAGTTTGGTGGGGGCTGGTGGAGAGAGAGGAGCCTAGGGTTTATAATTGGCAGGGGTATATGGAGATTGTTGCATTGGCTCGAAGGTGTGGGTTGAAGGTTCGAGTTGTGATGGCGTTTCATCAATGTGGCACTGGACCTGGTGATCCTTCCTGGATCCCTCTTCCTCAATGGGTGCTTGAAGAGATGGATAGAGATCCAGATTTAGCATTTTCTGACAGGTTTGGAACAAGGAATATGGAGTACATTTCCTTAGGATGTGATATTCTTCCTGTTCTGCGGGGGCGATCTCCAATCCAAACATATGTAGATTTTATGAGGAACTTCAGAGACACTTTCAAACCTTTTCTTGGTCTTACCATAACAGTGATTCAAGTTGGGATGGGTCCTGCCGGTGAATTAAGATATCCTTCATGCCCTTCTCATAAGCTAACATGGGCTTGGAGGTCTTATGAACTTGGAGAGTTCCAGTGCTATGATAAGTACATGCTTGCATCCCTGAATGCTTGTGCTAGGGAGATTGGAATGCATGAGTGGGGAAATGGGGGTCCTATTGGCACTGGGAACTTGATGCACAATCCCGAACATACTGAATTTTTCAGAAGTAACGGGTCTTGGAATACACCATATGGTAAGTTTTTCCTTGAATGGTACTCAAGAATGCTACTTCTGCATGGAGAGAGGATATGCAAGGAAGCAGAGACCATTTTCCGTGGTATTGAAGTTCGCACATCAGCGAAAGTGGCTGGAATCCACTGGCATTATGGTACACAATCTCATCCATCCGAGTTAACAGCTGGCTATTATAACACATCGATCAGAGATGGATACCTCCCAATTGTTCGCATGTTCTGTAAGTATGGATTTACCTTGTGTTCCACATGCTTTGAAATGCAAGACGCAGACGAGAAACAGAGGAACCCAGTCAGTAGTCCAGAAGGTTTTCTTAGACAACTTCTATTGACCGCTAGGATTTGTGGTATACCTCTGGAAGGGGAAAATTCTGGAGCTAGGTTGGATGACAAATCATTTCAACAGGTGCTAAAGATGTCGAGTTTCTACTCAGACGGTCTGGAAAAACCATCCTTTTCATTCAACTTTGTGAGGATGGACAAGAACTTTTTTGAATACGATAATTGGGTCCGCTTTACTCGCTTTGTTAGACAAATGTCTGGTGGCCACAATTTTCGAGCCAAGCTAGATTTTGGAAGAGTGTCCAGTATGAAAGTTGGAGCAGCTTGTGCATATTAA 1629 0.4831 MAIASPSVPTFFASFCCTGAECTRFFLRSPSLVGNRSHRTRRCRLTISSGLNSSKPSDAGGHVSPNNGDFQYELQHGFSAQRSKGSPVFVTLPVDVVSSSGEVRRWKTMVQSFRAIAAAGVEGVVMEVWWGLVEREEPRVYNWQGYMEIVALARRCGLKVRVVMAFHQCGTGPGDPSWIPLPQWVLEEMDRDPDLAFSDRFGTRNMEYISLGCDILPVLRGRSPIQTYVDFMRNFRDTFKPFLGLTITVIQVGMGPAGELRYPSCPSHKLTWAWRSYELGEFQCYDKYMLASLNACAREIGMHEWGNGGPIGTGNLMHNPEHTEFFRSNGSWNTPYGKFFLEWYSRMLLLHGERICKEAETIFRGIEVRTSAKVAGIHWHYGTQSHPSELTAGYYNTSIRDGYLPIVRMFCKYGFTLCSTCFEMQDADEKQRNPVSSPEGFLRQLLLTARICGIPLEGENSGARLDDKSFQQVLKMSSFYSDGLEKPSFSFNFVRMDKNFFEYDNWVRFTRFVRQMSGGHNFRAKLDFGRVSSMKVGAACAY* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0228 542 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 37 520 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 SUPERFAMILY (Trans)glycosidases 84 536 IPR017853 -
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 385 396 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 441 463 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 255 277 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 120 134 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 141 159 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 163 184 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 332 351 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 368 384 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 403 426 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 Pfam Glycosyl hydrolase family 14 89 512 IPR001554 GO:0000272|GO:0016161
Vvi2g0228 542 Gene3D Glycosidases 78 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0228 Vvi-Chr2 1885570 1889062 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0228 87 521 Glycoside Hydrolase AT3G23920 51.818 2.09e-165 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0228 K01177 - vvi:100258256 1119.76