Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0225 ATGCCGGGACTGGTTTCCGTCAAGACTCCGCCGGATGCATCCCCGCTGACGATTTCTGTTACGGAAGCCGGATCGGTTTCTGAATCACGAAATTCTAAATTCGCATCTTCGACTCCAAAGAAGACTCCATCGCCATCCACTTCGCGATCCAGGCCCTCGCCGGATCGGAAGAAGAAGCCGCCGGAGAGTCCGGTTTTGGACGAGTCCTCGCTGGATAATCCGGATCTCGGTCCTTTCCTTCTGAAGCTGGCGCGCGACGCCATCGCGTCCGGGGACGGGCCAAACAAAGCGTTGGAGTACGCGCTCCGGGCGTCGAAGTCATTCGAGCGTTGCGCGGCGGAGGGGGAGCCCAGTTTGGACCTGGCGATGAGTTTGCACGTTGTGGCGGCGATTTACTGCAGTTTGGGAAGGTTTGAAGAGGCGATTCCGGTGCTAGAGCGGGCGATTGGGGTGCCGGAGGTGGCGAGAGGTGCGGATCACGCGCTTGCGGCGTTTTCGGGGTATATGCAGCTCGGAGATACGTTTTCGATGCTTGGACAGGTTGAACGGTCGATTCATTGTTACGAGGAAGGGTTGAAGATACAGATTGAGGCTTTGGGAGAGACGGATCCCAGAGTTGGAGAGACTTGCAGGTACTTAGCCGAGGCCCGTGTTCAAGCAATGCAATTTGATGAAGCTGAAAGCCTATGCAAGAAAACTCTTGAGATTCACAGTGTGCACAGTGAACCAGCATCTCTTGAAGAGGCAGCTGATCGTCGGCTGATGGCCCTCATATGTGAGGCAAAGGGAGATTATGAATCAGCCCTTGAGCATCTTGTTCTTGCCAGCATGGCAATGATTGCCAATGGACAAGACAATGAGGTTGCTGCTATTGATGTCAGCATTGGTAACATTTATCTTTCCCTTTGCCGCTATGATGAGGCTATCTTCTCTTACCAGAAGGCCCTCACTGTCTTCAAATCATCAAGAGGTGACAACCATCCTTCTGTTGCCTCTGTTTTTGTACGCCTTGCTGAACTATACTACAAGACAGGAAAGCTTCGGGAGTCCGGATCTTACTGTGAAAATGCACTGAGGATATATGCAAAACCTGTGCCAGGAACCACAGCAGAAGAGATTGCAGGTGGAATGACTGAAATTTCAGCCATTTATGAGTCTATAAATGAGCCTGAGGAAGCACTAAAGCTCTTGCAGAAGGCACTGAAATTGTTGGAGGATAAACCAGGACAACAAAGCACAATTGCAGGAATAGAAGCACGGATGGGTGTAATGTTTTACTTGGTTGGGAGGTATGGTGAAGCACGGAGCTCTTTTGAGAGTGCTGTAGCGAAACTTAGGGCCAGTGGGGAGAGGAAATCACCCTTCTTTGGGGTCGTGTTGAACCAGATGGGATTGGCTTGTGTACAGTTGTTCAAGATAGATGAGGCTGTTGAGTTGTTTGAAGAAGCAAGGGGAATACTTGAAAAGGAGTGTGGTCCATGTCACCAAGATACCATTGGAGTATATACCAATCTCGCGGCAACTTATGATGCTATGGGCAGAGTCGAAGATGCAATTGAGATACTGGAGTATGTTCTCAAATTGAGAGAAGAACAGCTTGGAACAGCAAACCCTGATTTTGATGATGAGAAGAAAAGGTTATCTGAGCTCCTGAAGGAAGCAGGCAAGGCCCGTAACAGAAAAGCAAAGTCTCTGCAAAACCTCATTGATCCTAACTCCAAGAGGACAAAAAAAGAAACAAAGAGATGGTCTGGTTTAGGTTTCAGAATTGGATAA 1776 0.4932 MPGLVSVKTPPDASPLTISVTEAGSVSESRNSKFASSTPKKTPSPSTSRSRPSPDRKKKPPESPVLDESSLDNPDLGPFLLKLARDAIASGDGPNKALEYALRASKSFERCAAEGEPSLDLAMSLHVVAAIYCSLGRFEEAIPVLERAIGVPEVARGADHALAAFSGYMQLGDTFSMLGQVERSIHCYEEGLKIQIEALGETDPRVGETCRYLAEARVQAMQFDEAESLCKKTLEIHSVHSEPASLEEAADRRLMALICEAKGDYESALEHLVLASMAMIANGQDNEVAAIDVSIGNIYLSLCRYDEAIFSYQKALTVFKSSRGDNHPSVASVFVRLAELYYKTGKLRESGSYCENALRIYAKPVPGTTAEEIAGGMTEISAIYESINEPEEALKLLQKALKLLEDKPGQQSTIAGIEARMGVMFYLVGRYGEARSSFESAVAKLRASGERKSPFFGVVLNQMGLACVQLFKIDEAVELFEEARGILEKECGPCHQDTIGVYTNLAATYDAMGRVEDAIEILEYVLKLREEQLGTANPDFDDEKKRLSELLKEAGKARNRKAKSLQNLIDPNSKRTKKETKRWSGLGFRIG* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0225 591 Gene3D Tetratricopeptide repeat domain 166 274 IPR011990 GO:0005515
Vvi2g0225 591 ProSiteProfiles TPR repeat profile. 374 407 IPR019734 GO:0005515
Vvi2g0225 591 FunFam Protein KINESIN LIGHT CHAIN-RELATED 2 451 568 - -
Vvi2g0225 591 SMART tpr_5 165 198 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 457 490 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 207 240 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 289 322 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 249 282 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 374 407 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 499 532 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 415 448 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 122 155 IPR019734 GO:0005515
Vvi2g0225 591 SMART tpr_5 331 364 IPR019734 GO:0005515
Vvi2g0225 591 SUPERFAMILY TPR-like 293 530 IPR011990 GO:0005515
Vvi2g0225 591 MobiDBLite consensus disorder prediction 12 50 - -
Vvi2g0225 591 Coils Coil 540 560 - -
Vvi2g0225 591 Coils Coil 387 407 - -
Vvi2g0225 591 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 29 574 - -
Vvi2g0225 591 Pfam MalT-like TPR region 127 273 IPR041617 -
Vvi2g0225 591 MobiDBLite consensus disorder prediction 1 73 - -
Vvi2g0225 591 Pfam Tetratricopeptide repeat 459 531 - -
Vvi2g0225 591 Pfam Tetratricopeptide repeat 288 349 - -
Vvi2g0225 591 Gene3D Tetratricopeptide repeat domain 69 165 IPR011990 GO:0005515
Vvi2g0225 591 ProSiteProfiles TPR repeat profile. 289 322 IPR019734 GO:0005515
Vvi2g0225 591 MobiDBLite consensus disorder prediction 51 65 - -
Vvi2g0225 591 SUPERFAMILY TPR-like 117 270 IPR011990 GO:0005515
Vvi2g0225 591 Gene3D Tetratricopeptide repeat domain 275 457 IPR011990 GO:0005515
Vvi2g0225 591 Gene3D Tetratricopeptide repeat domain 458 584 IPR011990 GO:0005515
Vvi2g0225 591 ProSiteProfiles TPR repeat profile. 499 532 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0225 Vvi-Chr2 1865523 1872460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi2g0225 293 529 Glycosyltransferase AT3G04240 22.785 5.77e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0225 - - vvi:100246244 1098.96