Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0216 ATGGCGTCTCCTTCGCTCCCGTCTTCTTCACTCCTTTCTCGCTTCTCTTCCGCTCAATCTTCTCCACCAATCACCAGTTTCACAGTTTTCTCGGGAAAACAGAGGTTCATTTACCATCCCAGGAGAGCCCCAGGCCTCTCCATTAGAGCCCTAACCCTAGATTTCTCCGGCTCCTTCTTCGAGGGCGGATTCGGGTCCGACGACGACCCGAATTCCCCTCCCGGACCGGGCATTGCGGCGGTGGAGGACAAGGATGAGCCCCAGTGTCCCCCCGGGCTCCGCCAATACGAGACCATGGCGGTTCTCAGGCCCGACATGTCGGAGGACGAGAGACTCGCGCTTACGCAGAAGTACGAGGAGTTGCTTGTTGCTGGGGGTGGCATGTATGTGGAGGTATTCAACAGAGGGGTCATTCCTCTAGCCTACAGCATCAAGAAGAAAAACAAGGCAGGAGAAAGCAACACTTACTTGGATGGTATTTACCTCCTTTTCACCTATTTTACCAAACCTGAGTCCATGGAAGTTCTTGAAGCAACACTGACAGCAGATGATGATGTCATCCGATCATCCAGTTTCAAAATAAGGAAACGAAAATATTAG 600 0.5217 MASPSLPSSSLLSRFSSAQSSPPITSFTVFSGKQRFIYHPRRAPGLSIRALTLDFSGSFFEGGFGSDDDPNSPPGPGIAAVEDKDEPQCPPGLRQYETMAVLRPDMSEDERLALTQKYEELLVAGGGMYVEVFNRGVIPLAYSIKKKNKAGESNTYLDGIYLLFTYFTKPESMEVLEATLTADDDVIRSSSFKIRKRKY* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0216 199 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 84 199 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi2g0216 199 Gene3D - 92 199 IPR014717 -
Vvi2g0216 199 CDD bS6_chloro_cyano 93 194 - -
Vvi2g0216 199 FunFam 30S ribosomal protein S6 alpha, chloroplastic 92 199 - -
Vvi2g0216 199 Pfam Ribosomal protein S6 95 193 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi2g0216 199 SUPERFAMILY Ribosomal protein S6 93 197 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Vvi2g0216 199 MobiDBLite consensus disorder prediction 64 90 - -
Vvi2g0216 199 MobiDBLite consensus disorder prediction 1 23 - -
Vvi2g0216 199 Hamap 30S ribosomal protein S6 [rpsF]. 93 196 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0216 K02990 - vvi:100244408 350.132