LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi2g0207	ATGGCTTATGATTATCCCCCGGAGAAGCTGTCAGTGTATGTCTCTGATGATGGAGGTTCTCAGCTGACTCTCTTTGCCTTCATAGAGGCTGCTAGGTTTGCCACCCACTGGTTACCCTATTGTAGAAAGAATAAGATTTTAGAAAGGTGTCCCGAGGCCTATTTTAGATCCAGTCCCTCATGGTCTCCTGAGACCGCTCAAATTAAGATGATGTATGAGAGAATGAGAGCTAGGGTGGAGAATGTGGTCAAGAGGGGGAGCATTTTGCCTGATTATATCACAAATGAGGCAGAATCTGAAGCCTTCAGCAGATGGGCTGATGGATTTACGCCTCGAGATCATCCTGCTGTTGTTCAGGTTTTGTTAGAGGCCGACAGAGATAAAGACATAACCGGCCATACAATGCCCAACCTTGTCTATGCGTCCAGAGAGAAAAACATGAATTTGCCCCATCATTTCAAGGCCGGTGCTCTTAATGTCCTGCTTCGAGTATCAGCAACCATGACCAATGCACCAATACTCCTGACCCTAGACAGCGACATGTACTCAAATGATTCGCAAACGCCTCTTTGTGCACTGTGTTTTCTCTTAGACCCTTGTATAGATTCAAAACTCGGATTTGTTCAGTTCCCTCAGATGTTCTATGGGATCAACAAGAATGATACTTATGGTGCTGAATCTAGACAGAGTGAAATTGTTCTAATTGGGATGGATGGATTGGTAGGGCCTACAAATATAGGTACAGGATGTTTTTTCCGCAGACAAGTCTTCCTTGGTGGCTCCTCCCCACAACTGAACCCTGATCTTCTAGTTAGCAAGTCAATCAAGTCCGAAGAAGTTTTAGCACTAGCACACCATGTTGCGGGCTGCAATTATGAAAATCAAACCAGTTGGGGCTCCAAGATGGGATTTAGGTATGGATCATTGGTTGAGGACTTATACACAGGCTATCGACTTCATTGTGAAGGATGGAAGTCCATTTTCTGCAATCCCAAAAGGCCTGCATTTCTGGGAAAGGCGCCTATCAATCTCAATGACATGTTGAATCAAACCGTAAGATGGTGTGTGGGACTCCTTGAAGTGGCATTTTGCAAGCATAGCCCTGTCACCTTTGGAGCCCGTTCCATAAACCTTCTCACAGGATTATGTTATGGGCACATGGCATTATGGCCTATTTCGTCCATTCCAGTTACCATCTATGCCTTTCTACCTCAGCTAGCTCTCCTCAAGTGTGTCTCAATCTTCCCAGAGGCCTCAGACCCTTGGTTTTTCTTGCGTCTATTTCTTTTCCTTGGAGCCTATGGACAAAATTGTCTTGAGTTTATGTTGTCTGGAGGATCAATCCAAAAGTGGTGGAATGATCAGAGGGTGTGGATGATGAGAGGGCTCTCAAGCATGATGTTTGGATTGGTGGAATACTTACTGAAGACCATTGGCATTTCCACATTTGGATTTAGTGTCACAAACAAGACTGTTGAAGAGGAACAAAGCAAGCGATACGACCAAGGGCTGTTCGAGTTTGGAGTCTCATCACCCTTGTTATTGCCAATGACAACAGCCGCCATAATCAACTGCATCTCTTTCCTATGGGGCATTGCCCAAATCTTCACACAAGGAAGGCTTGAAGGTATACTTCTACAGATGTTCTTAGCAGGTTTTGCGACGGTAAATTGCTGGCCAATATATGAAGCCATTCTGTTGAGGACCGACGGAGGAAAGATCCCATCGATGTACGAGAGGATGAGAGATAGAGTGGAGAATGTGGTCAAGAGAGGAAGCATTAGCAACGATTATATCCCTGATCAAAGAGAAATCGAAGCTTTCAGCAGATGGACTGATGAATTTACACCTCAGAATCATCCTCCTGTGATTCAGGTTTTACTAGAGCGTGGCAAAGACAAGGACATCACTGGCCATGACATGCCAAACCTCGTATACATCTCTAGAGAGAAAAGAATGGATTCCCCACATCACTTCAAGGCCGGTGCCCTTAACGTCCTACTTCGAGTATCAGCCACCATGACAAACGCACCAGTGATCTTGACCCTAGATGGCGACATGTACTCCAATGATCCACAGACACCTCTTCGCGTGCTGTGCTATCTTTTAGACCCTTCAATGGATCCAAAACTTGGGTATGTTCAGTTTCCGCAGATCTTCCATGGGATCAATAAGAGTGATATCTATGATGATGAACTAAGGCATGTGTATCAAGTTCAATTGTCCGGAATGGATGGATTGGCAGGCCCTCAACATGTAGGTTCTGGAGGTTTTTTCCGGCGAAAAATTTTCTTTGGTGGCTCATCAGAAACCCCAGAAATGAACCAGGATCAACTGACGAGGAAGTCGATCAGGTCCAAAGAAGTTTTAGCAATAGCTCACCATGTTGCAGGCTGCAATTTTGAGAACCAAACCAAATGGGGCACCAAGATGGGCTTTAGGTATGGTTCTTTGGTTGAGGACTTGCACACGAGCTATCAGCTGCAATGTGAGGGATGGAAATCCATTAACTGCAAACCTAAAAGGCCTGCATTTCTGGGAAATTCACCCCTCAACCTCCATGACTCGCTGAATCAAACTATGCGTTGGTCGGTTGGCCTCCTTGAAGTAGTCTTCTGCAAACATAACCCCATCATCTATGGAGTCCGGTTCATAAACCTTCTGTCAGGGTTAGGTTTTGCTTATTATGCCTTCTGGCCTTTTTGGTCGGTTCCCCTTACTATCTATGCCTTTCTCCCCCAGCTGGCTCTGCTCAATTCCACCTCAATCTTCCCAAAGGTCTCAGATCCTTGGTTTTTCGTCAATGTATTCCTTTTCCTTGGAGCCTATGGACAAGATTATCTGGAGTTCATATTATCTGGGGGGACAACACTAAGGTGGTGGAACAATCAGAGAATGTGGATGATGAGAGGACTCTCAAGTTTCCCATTTGGGTGGATTGAATACTTCCTGAAGTCCATGGGGATTTCGACTTTTGGGTTTAATGTGACAAGCAAGGTGGTTCAAGAGGAGCAAAGCAAGAGATACAAGGAAGGGATCTTCGAGTTTGGAGTTGCATCACCCTTGTTCTTGCCACCAACAACAGCAGCCATAATCAACTTGGCCTCATTCCTAAAGGGAATTGCACTAGTCTTCAAACAAGGAGGGCTTGAAGATCTTCTTCTGCAGATGTTGTTAGCTGGTTTTGGAATAGTGAACTGCTGGCCCATATATGAAGCCATGGTGTTGAGGACTGATGAAGGAAAATTACCACTCCGAGTATCAGCCACCATGACAAATGCACCAGTGATCCTAACCCTGGATAGCGACATGTACTCCAACGATCCACAAACGCCTCTGCGGGCGCTGTGCTACCTTTTAGATCCTTCCATGGATCCAAAACTAGGGTACATTCAGTTTCCTCAGGTTTTCCATGGGATCAACAAGAATGATATCTATGGGAAGTCACCCATCAACCTCCATGATTTTCTGAATCAAACCATGAGATGGTCAGTTGGCCTTCTTGAAGTTGCCTTCTCCAGATATAGCCCAATCACCTTTGGAGTCCAATCGATAAGCCTCCTTTCAGGGTTATGTTTTGCCCATTATACCTTCTGGGCGATTTGGGCGATTCCAGTCACCATCTATGCCTTTCTCCCCCAGCTAGCTCTGCTCAATTCTGCCTCAATATTCCCAAAGATATCAGATCCTTGGTTTTTGTTATATGTGGTTCTTTTCCTTGGAGCCTATGGACAAGACTATCTTGAGTTTCTATTATCCGGCAGGCCGACACAGAGGTGGTGGAACCACCAGAGGGCGTGGATTATGAGGGGACTATCGAGTTTCACGTTCGGGTTGGTTGAGTACTTGCTGAAGTATGTTGGCATTTCCACATTTGGGTTTAATGTGACGAGCAAGGTGGTTGAAGAAGAACAAAGCAAGCGATACCAGAAGGGGATCTTTGAGTTTGGAGTCCCATCCCCGATTTTCTTGCCGCTAACCACAGCAGCAATAATCAACTTTGTCGCATTCCTAACCGGCTTCGCAAAAGCCTGCAGGCAAAGAAGCATAGAAGATGTGTTTCTTCAAATGTTCTTGGCTGGTTTTGCAGTGGTGAACTGCTGTCCAGTATATGAAGCCATGGCCTGGAGGAGAGACCAAGGGAAATTGCCTCTGAAAATCACTGTGATTTCTGTAGTTCTAGCATGGGCTCTCTACTCAGCATCCTCTATGGCATTTTGA	4221	0.4546	MAYDYPPEKLSVYVSDDGGSQLTLFAFIEAARFATHWLPYCRKNKILERCPEAYFRSSPSWSPETAQIKMMYERMRARVENVVKRGSILPDYITNEAESEAFSRWADGFTPRDHPAVVQVLLEADRDKDITGHTMPNLVYASREKNMNLPHHFKAGALNVLLRVSATMTNAPILLTLDSDMYSNDSQTPLCALCFLLDPCIDSKLGFVQFPQMFYGINKNDTYGAESRQSEIVLIGMDGLVGPTNIGTGCFFRRQVFLGGSSPQLNPDLLVSKSIKSEEVLALAHHVAGCNYENQTSWGSKMGFRYGSLVEDLYTGYRLHCEGWKSIFCNPKRPAFLGKAPINLNDMLNQTVRWCVGLLEVAFCKHSPVTFGARSINLLTGLCYGHMALWPISSIPVTIYAFLPQLALLKCVSIFPEASDPWFFLRLFLFLGAYGQNCLEFMLSGGSIQKWWNDQRVWMMRGLSSMMFGLVEYLLKTIGISTFGFSVTNKTVEEEQSKRYDQGLFEFGVSSPLLLPMTTAAIINCISFLWGIAQIFTQGRLEGILLQMFLAGFATVNCWPIYEAILLRTDGGKIPSMYERMRDRVENVVKRGSISNDYIPDQREIEAFSRWTDEFTPQNHPPVIQVLLERGKDKDITGHDMPNLVYISREKRMDSPHHFKAGALNVLLRVSATMTNAPVILTLDGDMYSNDPQTPLRVLCYLLDPSMDPKLGYVQFPQIFHGINKSDIYDDELRHVYQVQLSGMDGLAGPQHVGSGGFFRRKIFFGGSSETPEMNQDQLTRKSIRSKEVLAIAHHVAGCNFENQTKWGTKMGFRYGSLVEDLHTSYQLQCEGWKSINCKPKRPAFLGNSPLNLHDSLNQTMRWSVGLLEVVFCKHNPIIYGVRFINLLSGLGFAYYAFWPFWSVPLTIYAFLPQLALLNSTSIFPKVSDPWFFVNVFLFLGAYGQDYLEFILSGGTTLRWWNNQRMWMMRGLSSFPFGWIEYFLKSMGISTFGFNVTSKVVQEEQSKRYKEGIFEFGVASPLFLPPTTAAIINLASFLKGIALVFKQGGLEDLLLQMLLAGFGIVNCWPIYEAMVLRTDEGKLPLRVSATMTNAPVILTLDSDMYSNDPQTPLRALCYLLDPSMDPKLGYIQFPQVFHGINKNDIYGKSPINLHDFLNQTMRWSVGLLEVAFSRYSPITFGVQSISLLSGLCFAHYTFWAIWAIPVTIYAFLPQLALLNSASIFPKISDPWFLLYVVLFLGAYGQDYLEFLLSGRPTQRWWNHQRAWIMRGLSSFTFGLVEYLLKYVGISTFGFNVTSKVVEEEQSKRYQKGIFEFGVPSPIFLPLTTAAIINFVAFLTGFAKACRQRSIEDVFLQMFLAGFAVVNCCPVYEAMAWRRDQGKLPLKITVISVVLAWALYSASSMAF*	1407

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi2g0207	1406	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	4	434	IPR029044	-
	Vvi2g0207	1406	SUPERFAMILY	Nucleotide-diphospho-sugar transferases	640	914	IPR029044	-
	Vvi2g0207	1406	FunFam	Cellulose synthase-like protein G3	102	259	-	-
	Vvi2g0207	1406	PANTHER	X-BOX TRANSCRIPTION FACTOR-RELATED	1085	1148	-	-
	Vvi2g0207	1406	FunFam	Cellulose synthase-like protein G3	608	766	-	-
	Vvi2g0207	1406	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	615	771	IPR029044	-
	Vvi2g0207	1406	Gene3D	Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A	106	264	IPR029044	-
	Vvi2g0207	1406	Pfam	Cellulose synthase	1147	1397	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vvi2g0207	1406	Pfam	Cellulose synthase	270	569	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vvi2g0207	1406	Pfam	Cellulose synthase	774	1078	IPR005150	GO:0016020\|GO:0016760\|GO:0030244
	Vvi2g0207	1406	Pfam	Cellulose synthase	2	264	IPR005150	GO:0016020\|GO:0016760\|GO:0030244

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi2g0207	Vvi-Chr2	1767619	1777192	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi2g0207	1	574	Glycosyltransferase	AT4G24010	54.437	0.0	656

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi2g0207	-		-	vvi:100267402	1186.02